haibol2016 / ATACseqQCWorkshopLinks
ATACseqQC tutorials for BioC 2019 workshop
☆19Updated 5 years ago
Alternatives and similar repositories for ATACseqQCWorkshop
Users that are interested in ATACseqQCWorkshop are comparing it to the libraries listed below
Sorting:
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆24Updated 6 months ago
- R/Bioconductor package for working with 10x scATACseq data☆42Updated 2 years ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- scDataviz: single cell dataviz and downstream analyses☆66Updated 4 years ago
- Functional enrichment analysis of high-throughput omics data☆20Updated last year
- Identify and correct invalid gene symbols☆60Updated last year
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- Toolbox with R scripts☆38Updated 7 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- The following code accompanies a manuscript combining single-cell RNA-sequencing and genotyping to analyze cellular hierarchies in acute …☆45Updated 5 years ago
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆107Updated 2 years ago
- Clone of the Bioconductor repository for the scater package.☆96Updated this week
- ☆55Updated 5 years ago
- Workshop for CNV analysis with Bioconductor☆17Updated last year
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆42Updated 4 years ago
- R package to visualize scRNA sequencing data.☆20Updated 3 years ago
- Clone of the Bioconductor repository for the batchelor package.☆18Updated 10 months ago
- HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data☆99Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆81Updated last week
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆107Updated 2 years ago
- R package for robust clustering of single cell RNA sequencing data☆39Updated 2 years ago
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆19Updated last week
- Normalize CITEseq Data☆66Updated 2 months ago
- collection of notebooks with different cytoscape workflows☆50Updated 2 years ago
- GLASS consortium☆42Updated 5 years ago
- ATAC-seq Quality Control☆25Updated 2 months ago
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆60Updated 2 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆45Updated 2 years ago