Creating multi-resolution embeddings and clusters from high dimensional data
☆59Sep 27, 2024Updated 2 years ago
Alternatives and similar repositories for Multiscale_PHATE
Users that are interested in Multiscale_PHATE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A collection of scripts and tools for loading, processing, and handling single cell data.☆77Sep 22, 2025Updated last year
- PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.☆561Mar 4, 2026Updated 8 months ago
- Scripts and notebooks for Qin & Cardoso Rodriguez et al☆11Dec 7, 2023Updated 2 years ago
- ☆15Aug 5, 2022Updated 4 years ago
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Learning cellular hierarchy from scRNAseq data☆12Oct 3, 2024Updated 2 years ago
- Quantifying experimental perturbations at single cell resolution☆118Sep 27, 2024Updated 2 years ago
- This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Can Liu, And…☆15Feb 17, 2021Updated 5 years ago
- NoLiES (non-linear embeddings surveyor) is an interactive web app that helps you explore and understand non-linear embeddings of tabular …☆10Jul 1, 2021Updated 5 years ago
- ☆16Apr 9, 2021Updated 5 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Mar 25, 2024Updated 2 years ago
- ☆20May 20, 2021Updated 5 years ago
- abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ☆13Sep 19, 2017Updated 9 years ago
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 3 years ago
- ☆12May 4, 2022Updated 4 years ago
- Blastocyst-like structures generated from human pluripotent stem cells☆13Sep 25, 2022Updated 4 years ago
- Tools for building and manipulating graphs in Python☆46Dec 18, 2025Updated 10 months ago
- Contains notebooks that analyse scsHi-C data and create the scsHi-C paper figures.☆10Nov 30, 2021Updated 4 years ago
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 3 years ago
- ☆13Aug 9, 2022Updated 4 years ago
- Code corresponding to the paper Diffusion Earth Mover's Distance and Distribution Embeddings☆38Nov 29, 2024Updated last year
- Spatial RNA velocity☆11Oct 3, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆15Aug 17, 2023Updated 3 years ago
- ☆46Nov 11, 2025Updated 11 months ago
- To reveal the cellular heterogeneity within flow cytometry data, clustering and pseudotime analysis can be performed. Here, we demonstrat…☆14Jul 5, 2022Updated 4 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆42Jan 6, 2021Updated 5 years ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆29Feb 4, 2023Updated 3 years ago
- [𝗜𝗖𝗠𝗟 𝟮𝟬𝟮𝟲] Dispersion loss counteracts embedding condensation and improves generalization in small language models☆22May 21, 2026Updated 5 months ago
- ☆43Jun 11, 2022Updated 4 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆61May 30, 2022Updated 4 years ago
- python API to the CoGAPS NMF package☆23Jul 24, 2026Updated 3 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆18Sep 25, 2026Updated last month
- Diffusion curvature and Hessian prediction using point samples from quadratic hypersurfaces☆11Aug 19, 2024Updated 2 years ago
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- ☆15Feb 28, 2022Updated 4 years ago
- ☆12Dec 4, 2023Updated 2 years ago
- Omics data analysis☆17Sep 24, 2026Updated last month
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆32Aug 8, 2023Updated 3 years ago