Alternatives and similar repositories for MAGIC

Users that are interested in MAGIC are comparing it to the libraries listed below

• theislab / scarches
  Reference mapping for single-cell genomics
  ☆386Updated 3 weeks ago
• dynverse / dynbenchmark
  Comparison of methods for trajectory inference on single-cell data 🥇
  ☆216Updated 2 years ago
• welch-lab / liger
  R package for integrating and analyzing multiple single-cell datasets
  ☆422Updated 2 months ago
• brianhie / scanorama
  Panoramic stitching of single cell data
  ☆291Updated 3 months ago
• theislab / scib
  Benchmarking analysis of data integration tools
  ☆388Updated last month
• theislab / paga
  Mapping out the coarse-grained connectivity structures of complex manifolds.
  ☆229Updated 5 years ago
• agitter / single-cell-pseudotime
  An overview of algorithms for estimating pseudotime in single-cell RNA-seq data
  ☆428Updated last month
• hemberg-lab / scRNA.seq.datasets
  Collection of public scRNA-Seq datasets used by our group
  ☆173Updated 4 years ago
• theislab / scvelo
  RNA Velocity generalized through dynamical modeling
  ☆470Updated 8 months ago
• theislab / cellrank
  CellRank: dynamics from multi-view single-cell data
  ☆402Updated last month
• scverse / scanpy-tutorials
  Scanpy Tutorials.
  ☆225Updated this week
• kstreet13 / slingshot
  Functions for identifying and characterizing continuous developmental trajectories in single-cell data.
  ☆310Updated last year
• r3fang / SnapATAC
  Analysis Pipeline for Single Cell ATAC-seq
  ☆320Updated 2 years ago
• Oshlack / splatter
  Simple simulation of single-cell RNA sequencing data
  ☆231Updated 2 months ago
• kharchenkolab / conos
  R package for the joint analysis of multiple single-cell RNA-seq datasets
  ☆215Updated last year
• cole-trapnell-lab / monocle-release
  ☆290Updated 3 years ago
• Teichlab / cellphonedb
  ☆360Updated 3 years ago
• tabdelaal / scRNAseq_Benchmark
  Bench-marking classification tools for scRNA-seq data
  ☆189Updated 3 years ago
• cellgeni / sceasy
  A package to help convert different single-cell data formats to each other
  ☆444Updated last year
• RGLab / MAST
  Tools and methods for analysis of single cell assay data in R
  ☆256Updated last week
• NBISweden / excelerate-scRNAseq
  Single RNA-seq data analysis with R (Finland, May, 2019)
  ☆226Updated 3 years ago
• dylkot / cNMF
  Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data
  ☆380Updated 2 months ago
• broadinstitute / CellBender
  CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
  ☆360Updated 3 months ago
• theislab / diffxpy
  Differential expression analysis for single-cell RNA-seq data.
  ☆204Updated last week
• crazyhottommy / awesome_spatial_omics
  tools and notes for spatial omics
  ☆322Updated 8 months ago
• slowkow / harmonypy
  🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.
  ☆239Updated last year
• xuranw / MuSiC
  Multi-subject Single Cell Deconvolution
  ☆275Updated last year
• velocyto-team / velocyto.py
  RNA velocity estimation in Python
  ☆173Updated 3 weeks ago
• morris-lab / CellOracle
  This is the alpha version of the CellOracle package
  ☆392Updated 9 months ago
• pinellolab / scATAC-benchmarking
  Benchmarking computational single cell ATAC-seq methods
  ☆184Updated 4 years ago