KrishnaswamyLab / MAGICLinks
MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.
☆375Updated last year
Alternatives and similar repositories for MAGIC
Users that are interested in MAGIC are comparing it to the libraries listed below
Sorting:
- Comparison of methods for trajectory inference on single-cell data 🥇☆218Updated 2 years ago
- Panoramic stitching of single cell data☆293Updated 5 months ago
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆231Updated 5 years ago
- An overview of algorithms for estimating pseudotime in single-cell RNA-seq data☆433Updated last week
- Collection of public scRNA-Seq datasets used by our group☆173Updated 4 years ago
- Reference mapping for single-cell genomics☆396Updated 3 weeks ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆217Updated last year
- Benchmarking analysis of data integration tools☆399Updated 3 months ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆395Updated 4 months ago
- R package for integrating and analyzing multiple single-cell datasets☆420Updated 2 weeks ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆368Updated 4 months ago
- Simple simulation of single-cell RNA sequencing data☆233Updated 2 weeks ago
- Multi-subject Single Cell Deconvolution☆276Updated last year
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆320Updated last year
- RNA velocity estimation in Python☆174Updated 2 months ago
- Analysis Pipeline for Single Cell ATAC-seq☆321Updated 2 years ago
- ☆359Updated 4 years ago
- Tools and methods for analysis of single cell assay data in R☆258Updated 2 months ago
- ☆291Updated 3 years ago
- A package to help convert different single-cell data formats to each other☆450Updated last year
- Single RNA-seq data analysis with R (Finland, May, 2019)☆228Updated 3 years ago
- Bench-marking classification tools for scRNA-seq data☆189Updated 3 years ago
- Benchmarking computational single cell ATAC-seq methods☆185Updated 5 years ago
- RNA Velocity generalized through dynamical modeling☆481Updated last week
- CellRank: dynamics from multi-view single-cell data☆411Updated last month
- Differential expression analysis for single-cell RNA-seq data.☆205Updated 2 months ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆169Updated 3 years ago
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆194Updated 2 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆169Updated last year
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆474Updated last year