Alternatives and similar repositories for MAGIC

Users that are interested in MAGIC are comparing it to the libraries listed below

• brianhie / scanorama
  Panoramic stitching of single cell data
  ☆292Updated 6 months ago
• dynverse / dynbenchmark
  Comparison of methods for trajectory inference on single-cell data 🥇
  ☆218Updated 2 years ago
• agitter / single-cell-pseudotime
  An overview of algorithms for estimating pseudotime in single-cell RNA-seq data
  ☆435Updated 2 weeks ago
• hemberg-lab / scRNA.seq.datasets
  Collection of public scRNA-Seq datasets used by our group
  ☆174Updated 4 years ago
• theislab / paga
  Mapping out the coarse-grained connectivity structures of complex manifolds.
  ☆232Updated 5 years ago
• welch-lab / liger
  R package for integrating and analyzing multiple single-cell datasets
  ☆425Updated last month
• theislab / scib
  Benchmarking analysis of data integration tools
  ☆400Updated 4 months ago
• Teichlab / cellphonedb
  ☆358Updated 4 years ago
• kstreet13 / slingshot
  Functions for identifying and characterizing continuous developmental trajectories in single-cell data.
  ☆322Updated last year
• dylkot / cNMF
  Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data
  ☆399Updated 4 months ago
• cellgeni / sceasy
  A package to help convert different single-cell data formats to each other
  ☆452Updated last year
• Oshlack / splatter
  Simple simulation of single-cell RNA sequencing data
  ☆233Updated last week
• r3fang / SnapATAC
  Analysis Pipeline for Single Cell ATAC-seq
  ☆320Updated 2 years ago
• theislab / scarches
  Reference mapping for single-cell genomics
  ☆397Updated last month
• broadinstitute / CellBender
  CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
  ☆371Updated 5 months ago
• kharchenkolab / conos
  R package for the joint analysis of multiple single-cell RNA-seq datasets
  ☆217Updated last year
• RGLab / MAST
  Tools and methods for analysis of single cell assay data in R
  ☆257Updated 3 months ago
• crazyhottommy / awesome_spatial_omics
  tools and notes for spatial omics
  ☆341Updated 10 months ago
• cole-trapnell-lab / monocle-release
  ☆291Updated 3 years ago
• velocyto-team / velocyto.py
  RNA velocity estimation in Python
  ☆175Updated 3 months ago
• theislab / scvelo
  RNA Velocity generalized through dynamical modeling
  ☆482Updated 3 weeks ago
• NBISweden / excelerate-scRNAseq
  Single RNA-seq data analysis with R (Finland, May, 2019)
  ☆230Updated 3 years ago
• pinellolab / scATAC-benchmarking
  Benchmarking computational single cell ATAC-seq methods
  ☆184Updated 5 years ago
• xuranw / MuSiC
  Multi-subject Single Cell Deconvolution
  ☆278Updated last year
• theislab / diffxpy
  Differential expression analysis for single-cell RNA-seq data.
  ☆206Updated 2 months ago
• MarioniLab / miloR
  R package implementation of Milo for testing for differential abundance in KNN graphs
  ☆409Updated 4 months ago
• dmcable / spacexr
  Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …
  ☆430Updated 6 months ago
• aertslab / SCENICprotocol
  A scalable SCENIC workflow for single-cell gene regulatory network analysis
  ☆169Updated 3 years ago
• theislab / kBET
  An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
  ☆169Updated last year
• tabdelaal / scRNAseq_Benchmark
  Bench-marking classification tools for scRNA-seq data
  ☆190Updated 3 years ago