KrishnaswamyLab / MAGICLinks
MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.
☆364Updated 9 months ago
Alternatives and similar repositories for MAGIC
Users that are interested in MAGIC are comparing it to the libraries listed below
Sorting:
- Panoramic stitching of single cell data☆285Updated last year
- Reference mapping for single-cell genomics☆375Updated last month
- Benchmarking analysis of data integration tools☆366Updated 6 months ago
- R package for integrating and analyzing multiple single-cell datasets☆417Updated 2 months ago
- Collection of public scRNA-Seq datasets used by our group☆173Updated 4 years ago
- Comparison of methods for trajectory inference on single-cell data 🥇☆208Updated last year
- An overview of algorithms for estimating pseudotime in single-cell RNA-seq data☆427Updated last month
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆347Updated 4 months ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆298Updated last year
- RNA Velocity generalized through dynamical modeling☆451Updated 4 months ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆213Updated last year
- Analysis Pipeline for Single Cell ATAC-seq☆317Updated 2 years ago
- Simple simulation of single-cell RNA sequencing data☆228Updated last week
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆223Updated 5 years ago
- This is the alpha version of the CellOracle package☆366Updated 6 months ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆232Updated last year
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆522Updated 3 weeks ago
- NicheNet: predict active ligand-target links between interacting cells☆551Updated 2 weeks ago
- A package to help convert different single-cell data formats to each other☆433Updated last year
- ☆290Updated 3 years ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆338Updated last year
- Single RNA-seq data analysis with R (Finland, May, 2019)☆226Updated 2 years ago
- ☆357Updated 3 years ago
- Multi-subject Single Cell Deconvolution☆264Updated last year
- RNA velocity estimation in Python☆171Updated 2 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆229Updated 2 years ago
- Differential expression analysis for single-cell RNA-seq data.☆199Updated 4 months ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆162Updated last year
- Fast, sensitive and accurate integration of single-cell data with Harmony☆580Updated 8 months ago
- Bench-marking classification tools for scRNA-seq data☆186Updated 3 years ago