KrishnaswamyLab / MAGICLinks
MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.
☆367Updated 10 months ago
Alternatives and similar repositories for MAGIC
Users that are interested in MAGIC are comparing it to the libraries listed below
Sorting:
- Panoramic stitching of single cell data☆286Updated 3 weeks ago
- An overview of algorithms for estimating pseudotime in single-cell RNA-seq data☆426Updated last week
- Benchmarking analysis of data integration tools☆373Updated 6 months ago
- Comparison of methods for trajectory inference on single-cell data 🥇☆213Updated last year
- A package to help convert different single-cell data formats to each other☆434Updated last year
- Collection of public scRNA-Seq datasets used by our group☆173Updated 4 years ago
- Reference mapping for single-cell genomics☆375Updated 2 weeks ago
- R package for integrating and analyzing multiple single-cell datasets☆418Updated 2 weeks ago
- RNA Velocity generalized through dynamical modeling☆456Updated 5 months ago
- Analysis Pipeline for Single Cell ATAC-seq☆318Updated 2 years ago
- ☆356Updated 3 years ago
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆223Updated 5 years ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆355Updated 5 months ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆300Updated last year
- Benchmarking computational single cell ATAC-seq methods☆184Updated 4 years ago
- This is the alpha version of the CellOracle package☆372Updated 7 months ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆213Updated last year
- tools and notes for spatial omics☆311Updated 5 months ago
- Simple simulation of single-cell RNA sequencing data☆228Updated 3 weeks ago
- CellRank: dynamics from multi-view single-cell data☆393Updated 4 months ago
- ☆289Updated 3 years ago
- Differential expression analysis for single-cell RNA-seq data.☆200Updated 5 months ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆372Updated last month
- Bench-marking classification tools for scRNA-seq data☆186Updated 3 years ago
- Scanpy Tutorials.☆219Updated last week
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆165Updated last year
- RNA velocity estimation in Python☆172Updated 3 months ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆291Updated 3 weeks ago
- Multi-subject Single Cell Deconvolution☆266Updated last year
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆387Updated 3 weeks ago