const-ae / transformGamPoi-Paper

Related projects ⓘ

Alternatives and complementary repositories for transformGamPoi-Paper

• PFPrzytycki / CellWalkR
  CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements
  ☆10Updated 3 weeks ago
• liulab-dfci / lisa
  epigenome analysis to rank transcription factors
  ☆13Updated 4 years ago
• theislab / moslin
  Code, data and analysis for moslin.
  ☆11Updated last month
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆20Updated 7 months ago
• satijalab / scChromHMM
  🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…
  ☆24Updated 3 years ago
• lciernik / ANS_signature_scoring
  A gene expression signature scoring Python package.
  ☆10Updated last year
• csglab / GEDI
  Gene Expression Decomposition and Integration
  ☆15Updated 3 months ago
• klarman-cell-observatory / perturbseq
  Perturb-seq analysis package
  ☆14Updated 6 months ago
• dcalderon / rolypoly
  Method for identifying trait-relevant gene annotations from GWAS summary statistics.
  ☆17Updated 2 years ago
• saeyslab / spotless-benchmark
  A repository for benchmarking spatial deconvolution and mapping tools
  ☆27Updated last month
• azizilab / decipher
  A single-cell analysis toolkit to jointly analyze samples from distinct conditions
  ☆20Updated 2 months ago
• BennyStrobes / surge
  ☆11Updated 11 months ago
• anna-neufeld / countsplit
  ☆20Updated last year
• pachterlab / kite
  kallisto index tag extractor
  ☆20Updated 5 years ago
• mainciburu / WAT3R
  Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)
  ☆22Updated last year
• jacobhepkema / scover
  scover
  ☆22Updated last year
• igrabski / scRNAseq-cell-type
  Probabilistic gene expression barcodes for cell type annotation
  ☆25Updated 2 years ago
• davemcg / scEiaD
  Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
  ☆24Updated 10 months ago
• stephenslab / fastglmpca
  Fast algorithms for GLM-PCA.
  ☆11Updated 3 months ago
• SydneyBioX / CiteFuse
  CiteFuse:
  ☆26Updated last year
• alexQiSong / scSTEM
  Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…
  ☆18Updated 2 years ago
• EraslanBas / PerturbDecode
  An end-to-end computational pipeline for large Perturb-seq screens
  ☆12Updated last year
• immunogenomics / singlecellmethods
  Collection of useful methods for single cell analysis
  ☆14Updated 3 months ago
• pachterlab / BHGP_2022
  ☆21Updated 2 years ago
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆23Updated 3 years ago
• pachterlab / GFCP_2022
  RNA velocity validation
  ☆23Updated 2 years ago
• DavisLaboratory / scDECAF
  Reference-free celltype and phenotype annotation in single cell RNAseq by learning geneset representations
  ☆12Updated 4 months ago
• MarioniLab / geneBasisR
  R package for gene selection using k-NN graphs.
  ☆13Updated last year
• jgamache014 / snRNA-seq-workflow
  Human brain, >200,000 nuclei
  ☆24Updated 3 years ago
• KChen-lab / SCMER
  Marker Selection by matching manifolds and elastic net
  ☆23Updated last month