dpeerlab / seqcLinks
Single-Cell Sequencing Quality Control and Processing Software
☆16Updated 3 years ago
Alternatives and similar repositories for seqc
Users that are interested in seqc are comparing it to the libraries listed below
Sorting:
- The million-scale method for single-cell analysis☆10Updated last year
- A single-cell RNAseq differential expression analysis approach in case-control study☆9Updated 3 years ago
- ☆16Updated 3 years ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆14Updated 6 years ago
- Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel☆15Updated 2 years ago
- a computational pipeline for the quantification of the Tumor Immune contexture from human RNA-seq data☆18Updated 3 years ago
- Non-negative Independent Factor Analysis for single cell RNA-seq☆11Updated 3 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated last year
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year
- Marker gene selection from scRNA-seq data☆15Updated 4 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated 10 months ago
- Marker Selection by matching manifolds and elastic net☆23Updated 7 months ago
- Scripts for data and figure generation in SAVER paper☆17Updated 4 years ago
- ☆17Updated 10 months ago
- Algorithms for single-cell analysis☆29Updated 3 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆15Updated 2 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆19Updated last year
- Code associated with MIX-seq manuscript☆15Updated 4 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Updated 2 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Updated 6 years ago
- Version 2.1.0 released☆23Updated 5 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- Bayesian model selection to detect zero-inflated genes☆8Updated 4 years ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆22Updated 9 months ago
- ☆12Updated 5 years ago
- ☆11Updated 5 years ago
- ☆10Updated 3 years ago
- TRUST4 manuscript evaluation☆14Updated 2 years ago