Alternatives and similar repositories for seqc:

Users that are interested in seqc are comparing it to the libraries listed below

• jingshuw / descend
  ☆16Updated 3 years ago
• epigen / scifiRNA-seq_publication
  The million-scale method for single-cell analysis
  ☆10Updated last year
• mqzhanglab / BSDE
  A single-cell RNAseq differential expression analysis approach in case-control study
  ☆9Updated 3 years ago
• Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel
  ☆15Updated 2 years ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆21Updated last year
• KChen-lab / SCMarker
  Marker gene selection from scRNA-seq data
  ☆15Updated 4 years ago
• navinlabcode / copykit
  Toolkit for single-cell copy number analysis
  ☆21Updated 6 months ago
• linnarsson-lab / cytograph
  Algorithms for single-cell analysis
  ☆29Updated 3 years ago
• jgamache014 / snRNA-seq-workflow
  Human brain, >200,000 nuclei
  ☆24Updated 3 years ago
• Pinlyu3 / CellAnn_shinyapp
  CellAnn
  ☆12Updated last year
• SGDDNB / GeneSwitches
  Ordering gene-expression and functional events in single-cell experiments
  ☆21Updated last year
• adoostparast / CellR
  CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq
  ☆17Updated 3 years ago
• dcalderon / rolypoly
  Method for identifying trait-relevant gene annotations from GWAS summary statistics.
  ☆17Updated 2 years ago
• khodosevichlab / CellAnnotatoR
  Automated marker-based annotation of cell types
  ☆13Updated 2 years ago
• secrierlab / EMT
  This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.
  ☆12Updated 2 years ago
• liulab-dfci / lisa
  epigenome analysis to rank transcription factors
  ☆13Updated 5 years ago
• LieberInstitute / 10xPilot_snRNAseq-human
  10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC
  ☆22Updated 2 years ago
• SpatialTranscriptomicsResearch / std-nb
  Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018
  ☆22Updated 6 years ago
• reedliu / scRNA-codes
  ☆17Updated 5 years ago
• LTLA / scRNAseq
  Clone of the Bioconductor repository for the scRNAseq package.
  ☆25Updated 3 months ago
• powellgenomicslab / ascend
  Analysis of Single Cell Expression, Normalization and Differential expression
  ☆12Updated 5 years ago
• epigen / scifiRNA-seq
  ☆12Updated 4 years ago
• churchill-lab / scRATE
  Bayesian model selection to detect zero-inflated genes
  ☆8Updated 4 years ago
• cole-trapnell-lab / pseudospace
  ☆12Updated 5 years ago
• broadinstitute / mix_seq_ms
  Code associated with MIX-seq manuscript
  ☆15Updated 4 years ago
• ding-lab / PanCan_snATAC_publication
  ☆17Updated 8 months ago
• Henikoff / scCUT-Tag
  ☆16Updated last year
• single-cell-genetics / singlecell_neuroseq_paper
  Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation
  ☆21Updated 9 months ago
• ajitjohnson / imsig
  Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
  ☆26Updated 4 years ago
• LTLA / batchelor
  Clone of the Bioconductor repository for the batchelor package.
  ☆16Updated last month