Imputation of single cell RNA-sequencing data with autoencoder
☆16Jun 23, 2021Updated 5 years ago
Alternatives and similar repositories for LATE
Users that are interested in LATE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆24Apr 19, 2021Updated 5 years ago
- ☆11Jan 7, 2020Updated 6 years ago
- An interpretable deep learning model for cancer classification using high-dimensional omics data☆18Jan 24, 2022Updated 4 years ago
- Bootstrap imputation for scRNAseq data☆12Jul 18, 2020Updated 6 years ago
- Research Paper: "Graph Contrastive Learning as a Versatile Foundation for Advanced scRNA-seq Data Analysis"☆11Nov 20, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- nimfa - A Python Library for Nonnegative Matrix Factorization Techniques☆10Aug 30, 2018Updated 8 years ago
- ☆15Jun 17, 2021Updated 5 years ago
- ☆34Jun 12, 2019Updated 7 years ago
- ☆48Jun 21, 2019Updated 7 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 4 years ago
- Simultaneous deep generative modeling and clustering of single cell genomic data☆33Nov 14, 2022Updated 3 years ago
- ☆19May 15, 2025Updated last year
- R markdown notebooks for the Tabula Muris network analysis in Iacono et al. (2019)☆12Jun 30, 2021Updated 5 years ago
- ClusterMap is an R package to analyze and compare two or more single cell expression datasets.☆22Jan 17, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆19Mar 11, 2024Updated 2 years ago
- Quantifying experimental perturbations at single cell resolution☆118Sep 27, 2024Updated 2 years ago
- ☆17Sep 20, 2020Updated 6 years ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆77Sep 22, 2025Updated last year
- Single-cell RNA-seq Gene Expression Recovery☆118Nov 28, 2024Updated last year
- a bioinformatics tool for simulating single-cell genome sequencing data☆10Dec 19, 2019Updated 6 years ago
- Scripts for data and figure generation in SAVER paper☆19Jan 5, 2021Updated 5 years ago
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆13Oct 1, 2024Updated 2 years ago
- A repository housing metadata and data files (or links to data files) that are being prepared as sample data bundles for various uses.☆13Feb 12, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆20Mar 21, 2021Updated 5 years ago
- UNCURL is a tool for single cell RNA-seq data analysis.☆15Jun 27, 2022Updated 4 years ago
- Clustering cells from single cell RNA seq assays☆46Nov 19, 2018Updated 7 years ago
- scRNA-seq workshop in Oxford on 9 September 2016☆11Sep 7, 2016Updated 10 years ago
- Negative-Binomial VAE for discrete data☆18Jul 18, 2020Updated 6 years ago
- Population balance analysis☆47Apr 25, 2019Updated 7 years ago
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆25May 14, 2023Updated 3 years ago
- ☆40May 10, 2026Updated 5 months ago
- Create PyTorch Datasets from AnnData☆21Jan 6, 2026Updated 9 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- SHARP: Single-cell RNA-seq Hyper-fast and Accurate processing via ensemble Random Projection☆18Apr 26, 2021Updated 5 years ago
- Tools for working with Variant Call Format files.☆11Jul 2, 2026Updated 4 months ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆109Jul 3, 2023Updated 3 years ago
- Enabling differential allele-specific analysis☆12Sep 10, 2026Updated last month
- Archetypal Analysis network (AAnet)☆41Jan 30, 2025Updated last year
- Deep soft K-means clustering with self-training for single cell RNA sequence data☆32Jul 20, 2020Updated 6 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆42Mar 31, 2026Updated 7 months ago