audreyqyfu / LATELinks
Imputation of single cell RNA-sequencing data with autoencoder
☆16Updated 4 years ago
Alternatives and similar repositories for LATE
Users that are interested in LATE are comparing it to the libraries listed below
Sorting:
- Bootstrap imputation for scRNAseq data☆12Updated 4 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- ☆9Updated 5 years ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago
- ☆37Updated last week
- Comparison of single cell normalization strategies☆10Updated 3 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated 8 months ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆55Updated 2 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Updated 3 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated 11 months ago
- Scripts for data and figure generation in SAVER paper☆17Updated 4 years ago
- ☆29Updated 2 years ago
- ☆11Updated 5 years ago
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆17Updated 4 years ago
- SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data☆15Updated 4 years ago
- MultiMAP for integration of single cell multi-omics☆56Updated last year
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆26Updated 2 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Updated 6 years ago
- Comparison of dimensionality reduction methods☆30Updated 5 years ago
- Here I show how to use Deep Autoencoders for single cell RNA sequencing data analysis☆19Updated 6 years ago
- Regulatory networks with Direct Information☆16Updated 5 years ago
- ☆16Updated 3 years ago
- The source code and results for different methods on annotating external testing datsets of human and mouse.☆12Updated 4 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆27Updated 3 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- ☆14Updated last month