KrishnaswamyLab / SingleCellWorkshopLinks
☆94Updated 4 years ago
Alternatives and similar repositories for SingleCellWorkshop
Users that are interested in SingleCellWorkshop are comparing it to the libraries listed below
Sorting:
- R package to access DoRothEA's regulons☆150Updated last year
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆95Updated 6 years ago
- ☆131Updated last year
- Tabula Muris Senis☆105Updated 2 years ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆147Updated 10 months ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆141Updated 2 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆93Updated last week
- trajectory inference☆105Updated 8 months ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆130Updated last year
- A docker image for single-cell analysis☆91Updated this week
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆77Updated 8 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆122Updated 3 weeks ago
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆157Updated last month
- Spatial transcriptomics of heart tissue☆96Updated last year
- SingleCellNet: classify single cells across species and platforms☆138Updated 2 years ago
- Single-Cell Clustering Assessment Framework☆105Updated last year
- Clonotype Neighbor Graph Analysis☆92Updated last month
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆119Updated 2 weeks ago
- ☆58Updated 4 years ago
- Scanpy use cases.☆87Updated 5 years ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆87Updated 7 months ago
- Single-cell RNA-seq Gene Expression Recovery☆111Updated 10 months ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆143Updated last year
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆113Updated 11 months ago
- Deep Learning based cell composition analysis with Scaden.☆82Updated 11 months ago
- Benchmarking computational single cell ATAC-seq methods☆184Updated 4 years ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆168Updated 6 months ago
- Multi-omic velocity inference☆111Updated 11 months ago
- Test genes for Spatial Variation☆176Updated last year