☆97Jan 27, 2021Updated 5 years ago
Alternatives and similar repositories for SingleCellWorkshop
Users that are interested in SingleCellWorkshop are comparing it to the libraries listed below
Sorting:
- A collection of scripts and tools for loading, processing, and handling single cell data.☆77Sep 22, 2025Updated 5 months ago
- Rmarkdown / compiled html files for human reprogramming dataset analysis☆18Jun 11, 2020Updated 5 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48May 23, 2020Updated 5 years ago
- Single cell RNA sequencing analysis course☆238Updated this week
- Comparison of single cell normalization strategies☆10Aug 13, 2021Updated 4 years ago
- R package for analyzing single-cell RNA-seq data☆179Feb 29, 2024Updated 2 years ago
- Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq an…☆1,553Dec 11, 2022Updated 3 years ago
- ☆11Sep 4, 2025Updated 5 months ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆26May 12, 2020Updated 5 years ago
- Focused multi-day workshop covering the material needed for a successful RNA-Seq experiment.☆16Sep 6, 2018Updated 7 years ago
- R package to do enrichment analysis for neoantigens☆13Feb 21, 2022Updated 4 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Apr 29, 2020Updated 5 years ago
- ☆25Aug 1, 2022Updated 3 years ago
- Generate Dose-Response Curves in Python☆13Jan 26, 2026Updated last month
- A list of scRNA-seq analysis tools☆775Feb 5, 2026Updated 3 weeks ago
- Capybara: A computational tool to measure cell identity and fate transitions☆61May 23, 2022Updated 3 years ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆579Jun 26, 2025Updated 8 months ago
- SingleCellNet: classify single cells across species and platforms☆141Aug 21, 2023Updated 2 years ago
- SCRAT: Single-Cell Regulome Analysis Tool☆15Apr 4, 2020Updated 5 years ago
- Regulatory networks with Direct Information in python☆40Mar 9, 2023Updated 2 years ago
- UNCURL is a tool for single cell RNA-seq data analysis.☆15Jun 27, 2022Updated 3 years ago
- Publication Page for MPAL Paper 2019☆83Jun 25, 2020Updated 5 years ago
- scPred package for cell type prediction from scRNA-seq data☆98Jan 18, 2024Updated 2 years ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆246Aug 18, 2025Updated 6 months ago
- Analysis of single cell RNA-seq data course☆679Apr 11, 2022Updated 3 years ago
- This contains the dataset for comparing scRNA-seq analysis methods☆92Aug 26, 2020Updated 5 years ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆82Updated this week
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆238May 8, 2023Updated 2 years ago
- scRNAseq analysis notes from Ming Tang☆785Dec 2, 2024Updated last year
- Multi-omics studies are available here☆52Jul 3, 2022Updated 3 years ago
- CellRank: dynamics from multi-view single-cell data☆430Updated this week
- Cell types enrichment analysis☆206May 27, 2024Updated last year
- ☆17May 15, 2024Updated last year
- Trajectory inference and differential expression over multiple conditions in scRNA-seq☆26Apr 22, 2021Updated 4 years ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆622Oct 10, 2025Updated 4 months ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆74Jul 26, 2018Updated 7 years ago
- SCSA: cell type annotation for single-cell RNA-seq data☆94Apr 11, 2023Updated 2 years ago
- Interfaces for HDF5-based Single Cell File Formats☆174Nov 4, 2023Updated 2 years ago
- Collection of public scRNA-Seq datasets used by our group☆173May 4, 2021Updated 4 years ago