KrishnaswamyLab / SingleCellWorkshop
☆90Updated 4 years ago
Alternatives and similar repositories for SingleCellWorkshop:
Users that are interested in SingleCellWorkshop are comparing it to the libraries listed below
- Episcanpy: Epigenomics Single Cell Analysis in Python☆142Updated 3 months ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆118Updated last year
- Benchmarking computational single cell ATAC-seq methods☆182Updated 4 years ago
- Tabula Muris Senis☆100Updated last year
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆87Updated 5 years ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆156Updated 8 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆100Updated last month
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆161Updated last year
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- R package to access DoRothEA's regulons☆142Updated last year
- scATAC-seq data analysis tools and papers☆104Updated last year
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆54Updated 11 months ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆197Updated 11 months ago
- A docker image for single-cell analysis☆82Updated last month
- A Bayesian model for compositional single-cell data analysis☆158Updated last year
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆151Updated 2 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆84Updated 8 months ago
- Bench-marking classification tools for scRNA-seq data☆185Updated 2 years ago
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆144Updated last week
- Spatial transcriptomics of heart tissue☆81Updated last year
- A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression an…☆79Updated 4 years ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆128Updated 4 months ago
- ☆127Updated last year
- Cell types enrichment analysis☆194Updated 9 months ago
- scDIOR: Single cell data IO softwaRe☆140Updated 3 years ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆129Updated 2 years ago
- A tool for detecting somatic variants in single cell data☆193Updated 6 months ago
- my notes for scATACseq analysis☆122Updated 10 months ago
- Clonotype Neighbor Graph Analysis☆83Updated 6 months ago
- Tools for single-cell data processing☆122Updated 9 months ago