Tools for building and manipulating graphs in Python
☆46Dec 18, 2025Updated 2 months ago
Alternatives and similar repositories for graphtools
Users that are interested in graphtools are comparing it to the libraries listed below
Sorting:
- Imputation of single cell RNA-sequencing data with autoencoder☆16Jun 23, 2021Updated 4 years ago
- Regulatory networks with Direct Information☆17Oct 14, 2019Updated 6 years ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆77Sep 22, 2025Updated 5 months ago
- Everything needed to replicate the figures from the paper "Engineering recurrent neural networks from task-relevant manifolds and dynamic…☆12Dec 5, 2019Updated 6 years ago
- Code and webpages for our study on teaching humans to defer to an AI☆12Nov 6, 2023Updated 2 years ago
- Breast Cancer Single Cell Atlas☆12Mar 31, 2022Updated 3 years ago
- Bootstrap imputation for scRNAseq data☆12Jul 18, 2020Updated 5 years ago
- benchmark for single-cell RNA-seq imputation methods☆29Mar 16, 2024Updated last year
- Accompanying code for our NeurIPS 2019 paper☆12Nov 7, 2019Updated 6 years ago
- deepSimDEF offers single- and multi-channel deep learning models for functional analysis of genes using Gene Ontology annotations of gene…☆13May 13, 2022Updated 3 years ago
- Materials for "RL for Inventory Optimization", Day 4 of the "RL for Operations Bootcamp", Kellogg School of Management, Northwestern Univ…☆18Jun 25, 2024Updated last year
- Implementation of the Earthmover distance metric in python.☆14Feb 5, 2026Updated 3 weeks ago
- A regularized version of RBM for unsupervised feature selection.☆13Nov 20, 2019Updated 6 years ago
- ☆21Mar 20, 2017Updated 8 years ago
- Research Paper: "Graph Contrastive Learning as a Versatile Foundation for Advanced scRNA-seq Data Analysis"☆10Nov 20, 2024Updated last year
- A Jupyter widget for comparing two embeddings with shared labels by their confusion, neighborhoods, and size.☆48Nov 14, 2024Updated last year
- A tool for automated uploading and version management of scientific data to Zenodo☆44Updated this week
- ☆17Jan 3, 2019Updated 7 years ago
- GyroSPD: Vector-valued Distance and Gyrocalculus on the Space of Symmetric Positive Definite Matrices☆18Nov 8, 2021Updated 4 years ago
- Regulatory networks with Direct Information in python☆40Mar 9, 2023Updated 2 years ago
- ☆19May 5, 2021Updated 4 years ago
- easy access to benchmark datasets☆50Aug 17, 2018Updated 7 years ago
- Imputing Single-cell RNA-seq data by combining Graph Convolution and Autoencoder Neural Networks☆20Jun 21, 2024Updated last year
- Single cell typing based on cell ontology☆53Dec 10, 2023Updated 2 years ago
- ☆46May 17, 2022Updated 3 years ago
- The official source code for "Shift-Robust Molecular Relational Learning with Causal Substructure"☆24May 31, 2023Updated 2 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 4 years ago
- MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological …☆378Oct 3, 2024Updated last year
- Creating multi-resolution embeddings and clusters from high dimensional data☆58Sep 27, 2024Updated last year
- Approximate knockoffs and model-free variable selection.☆57Oct 12, 2021Updated 4 years ago
- Bayesian Optimization of Risk Measures☆21Jan 10, 2024Updated 2 years ago
- MIMIC preprocessing for the ICML paper "Dynamic Measurement Scheduling for Event Forecasting Using Deep RL"☆19May 16, 2019Updated 6 years ago
- Ordered Preference Elicitation Strategies for Multi-Objective Decision Making using Gaussian Processes☆23Jul 25, 2018Updated 7 years ago
- Automated cell filtering for single-cell RNA sequencing data☆26Nov 14, 2023Updated 2 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Aug 8, 2022Updated 3 years ago
- Accurate and robust imputation of scRNA-seq data☆98Aug 21, 2019Updated 6 years ago
- ☆22Feb 7, 2020Updated 6 years ago
- ☆101Oct 1, 2024Updated last year
- A 3-Dimensional View of Human Metabolism and Disease☆31Feb 28, 2018Updated 8 years ago