KrishnaswamyLab / graphtoolsLinks
Tools for building and manipulating graphs in Python
☆46Updated last month
Alternatives and similar repositories for graphtools
Users that are interested in graphtools are comparing it to the libraries listed below
Sorting:
- generalized principal component analysis (GLM-PCA) implemented in python☆61Updated 5 years ago
- Systematically learn and evaluate manifolds from high-dimensional data☆104Updated 3 months ago
- Creating multi-resolution embeddings and clusters from high dimensional data☆58Updated last year
- DeepProfile framework, which learns a variational autoencoder (VAE) network from a vast quantity of publicly available gene expression sa…☆19Updated 7 years ago
- Graph regularized nonnegative matrix factorization (GNMF) in Python☆46Updated 5 years ago
- Here we address the global structure preservation by tSNE and UMAP☆47Updated 5 years ago
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆25Updated 2 years ago
- ☆30Updated 4 years ago
- Archetypal Analysis network (AAnet)☆40Updated last year
- Disease pathways in the human interactome☆23Updated 7 years ago
- Biological Network Integration using Convolutions☆63Updated 2 years ago
- Learning disentangled representations of single-cell data for high-quality generation☆16Updated last year
- ☆20Updated 4 years ago
- ☆17Updated 5 years ago
- Attraction-Repulsion Spectrum in Neighbor Embeddings☆31Updated 3 years ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆43Updated 3 years ago
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆72Updated 4 months ago
- The need to understand cell developmental processes has spawned a plethora of computational methods for discovering hierarchies from scRN…☆150Updated 4 years ago
- Python Wrapper for FIt-SNE☆45Updated 4 years ago
- Latent spaces for single cells☆21Updated 2 years ago
- Imputation of single cell RNA-sequencing data with autoencoder☆16Updated 4 years ago
- A Library for Denoising Single-Cell Data with Random Matrix Theory☆37Updated 2 years ago
- Source code for integrative nonnegative matrix factorization☆19Updated 7 years ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆76Updated 4 months ago
- This is the repository for the single-cell transcriptomics application of the Deep Generative Decoder (DGD), developed by the Krogh group…☆15Updated last year
- Integrative orthogonal non-negative matrix factorization☆32Updated 6 years ago
- Code to reproduce results in Ravindra NG* & Sehanobish A* et al. 2020, "Disease State Prediction From Single-Cell Data Using Graph Attent…☆18Updated 5 years ago
- Parallel opt-SNE implementation with Python wrapper☆38Updated 3 years ago
- PyTorch implementation of BasisVAE: Translation-invariant feature-level clustering with Variational Autoencoders☆42Updated 5 years ago
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆22Updated 2 years ago