Alternatives and similar repositories for graphtools

Users that are interested in graphtools are comparing it to the libraries listed below

• willtownes / glmpca-py
  generalized principal component analysis (GLM-PCA) implemented in python
  ☆59Updated 4 years ago
• canzarlab / JVis-learn
  ☆20Updated 4 years ago
• davisidarta / topometry
  Systematically learn and evaluate manifolds from high-dimensional data
  ☆101Updated 2 weeks ago
• cantinilab / OT-scOmics
  This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…
  ☆42Updated 2 years ago
• KrishnaswamyLab / AAnet
  Archetypal Analysis network (AAnet)
  ☆37Updated 8 months ago
• ayushnoori / metapaths
  Similarity search in heterogeneous knowledge graphs using meta paths.
  ☆28Updated 2 years ago
• bowang-lab / scFormer
  ☆19Updated 2 years ago
• KrishnaswamyLab / Multiscale_PHATE
  Creating multi-resolution embeddings and clusters from high dimensional data
  ☆56Updated last year
• facebookresearch / PoincareMaps
  The need to understand cell developmental processes has spawned a plethora of computational methods for discovering hierarchies from scRN…
  ☆150Updated 4 years ago
• ppsp-team / StratiPy
  Graph regularized nonnegative matrix factorization (GNMF) in Python
  ☆45Updated 5 years ago
• omiq-ai / Multicore-opt-SNE
  Parallel opt-SNE implementation with Python wrapper
  ☆37Updated 3 years ago
• openproblems-bio / neurips2021-notebooks
  ☆30Updated 3 years ago
• quadbio / latent-lego
  Latent spaces for single cells
  ☆21Updated last year
• bowang-lab / BIONIC
  Biological Network Integration using Convolutions
  ☆62Updated last year
• berenslab / ne-spectrum
  Attraction-Repulsion Spectrum in Neighbor Embeddings
  ☆31Updated 3 years ago
• davidbuterez / CellVGAE
  An unsupervised scRNA-seq analysis workflow with graph attention networks
  ☆26Updated 2 years ago
• NikolayOskolkov / tSNE_vs_UMAP_GlobalStructure
  Here we address the global structure preservation by tSNE and UMAP
  ☆47Updated 5 years ago
• pachterlab / CBP_2021
  ☆16Updated 3 years ago
• mims-harvard / pathways
  Disease pathways in the human interactome
  ☆23Updated 7 years ago
• KrishnaswamyLab / scprep
  A collection of scripts and tools for loading, processing, and handling single cell data.
  ☆74Updated 2 weeks ago
• calico / scmmd
  Maximum mean discrepancy comparisons for single cell profiling experiments
  ☆18Updated 3 years ago
• pachterlab / picasso
  Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.
  ☆70Updated last week
• dkobak / finer-tsne
  Code for the paper on t-SNE with variable degree of freedom
  ☆24Updated 5 years ago
• tbonald / paris
  Hierarchical graph clustering
  ☆38Updated 7 years ago
• KrishnaswamyLab / MELD
  Quantifying experimental perturbations at single cell resolution
  ☆110Updated last year
• welch-lab / MichiGAN
  Learning disentangled representations of single-cell data for high-quality generation
  ☆16Updated last year
• CamaraLab / scTDA
  An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data
  ☆52Updated 7 years ago
• yangzi4 / iNMF
  Source code for integrative nonnegative matrix factorization
  ☆19Updated 7 years ago
• jlakkis / CarDEC
  ☆19Updated 4 years ago
• flo-compbio / monet
  Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces
  ☆40Updated 4 years ago