maggiecrow / MetaNeighbor

Related projects ⓘ

Alternatives and complementary repositories for MetaNeighbor

• gillislab / MetaNeighbor
  A method to rapidly assess cell type identity using both functional and random gene sets
  ☆34Updated last year
• MarioniLab / scran
  Clone of the Bioconductor repository for the scran package.
  ☆40Updated 2 months ago
• hemberg-lab / scmap
  A tool for unsupervised projection of single cell RNA-seq data
  ☆89Updated 4 years ago
• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆38Updated 2 years ago
• faryabib / too-many-cells
  Cluster single cells and analyze cell clade relationships with colorful visualizations.
  ☆45Updated 3 years ago
• crazyhottommy / scclusteval
  Single Cell Cluster Evaluation
  ☆87Updated 3 years ago
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆36Updated 2 years ago
• KChen-lab / bindSC
  Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…
  ☆34Updated last year
• MSingerLab / COMETSC
  COMET Single-Cell Marker Detection tool
  ☆31Updated 2 years ago
• mojaveazure / loomR
  An R-based interface for loom files
  ☆63Updated 4 years ago
• JCVenterInstitute / NSForest
  A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…
  ☆54Updated last month
• Coolgenome / iTALK
  ☆58Updated 5 years ago
• ggjlab / scMCA
  Mouse cell atlas
  ☆59Updated 4 years ago
• msraredon / NICHES
  Niche Interactions and Cellular Heterogeneity in Extracellular Signaling
  ☆50Updated 2 months ago
• shenorrLabTRDF / cellAlign
  ☆37Updated 3 years ago
• single-cell-genetics / cardelino
  Clone identification from single-cell data
  ☆59Updated 2 years ago
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆57Updated 5 months ago
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆25Updated last month
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆42Updated last year
• FelixTheStudent / cellpypes
  Cell type pipes for R
  ☆51Updated 9 months ago
• meichendong / SCDC
  SCDC
  ☆42Updated last year
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆68Updated 2 months ago
• edsgard / trendsceek
  Identify genes with spatial expression trends in single-cell gene expression data
  ☆49Updated 6 years ago
• linnarsson-lab / developing-human-brain
  ☆24Updated 3 months ago
• AllonKleinLab / SPRING_dev
  ☆66Updated 7 months ago
• rcannood / SCORPIUS
  Linear trajectory inference for single-cell RNA-seq
  ☆58Updated 7 months ago
• klarman-cell-observatory / hdst
  ☆19Updated 5 years ago
• MarioniLab / miloDE
  Framework for sensitive DE testing (using neighbourhoods)
  ☆59Updated 4 months ago
• elimereu / matchSCore2
  ☆53Updated 3 years ago
• KlugerLab / DAseq
  ☆39Updated 3 years ago