☆48Mar 1, 2018Updated 8 years ago
Alternatives and similar repositories for MetaNeighbor
Users that are interested in MetaNeighbor are comparing it to the libraries listed below
Sorting:
- Algorithms for single-cell analysis☆29Jul 19, 2021Updated 4 years ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆26May 12, 2020Updated 5 years ago
- Python Implementation of MetaNeighbor scRNAseq Analysis Method☆10Nov 11, 2025Updated 4 months ago
- Hierarchical, iterative clustering for analysis of transcriptomics data in R☆120Aug 20, 2025Updated 7 months ago
- ☆14Feb 21, 2023Updated 3 years ago
- Scripts related to VISp and ALM scRNA-seq and FISH analysis for Tasic, et al., 2018.☆24Jun 15, 2018Updated 7 years ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 4 years ago
- Building Gene Sets and Mapping mFISH Data☆16Aug 20, 2025Updated 7 months ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Jan 9, 2025Updated last year
- Use hodge decomposition for trajectory analysis☆23Nov 12, 2025Updated 4 months ago
- ☆15Jun 3, 2019Updated 6 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆22Jun 28, 2024Updated last year
- Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas☆103Feb 25, 2026Updated 3 weeks ago
- ☆13Nov 13, 2018Updated 7 years ago
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 5 years ago
- This repository contains code to generate standardized cell type nomenclature from an R "dendrogram".☆13Apr 25, 2022Updated 3 years ago
- Acquiring images from allen brain atlas, mouse ISH experiments in R.☆17Mar 20, 2024Updated 2 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆170Jan 26, 2024Updated 2 years ago
- Feature Ranking in (possibly large) Clustered Single Cell Data☆41Apr 15, 2021Updated 4 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆47Mar 13, 2025Updated last year
- Tools and scripts for EASI-FISH image data analysis☆17Oct 19, 2022Updated 3 years ago
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆18Jul 14, 2023Updated 2 years ago
- Analysis pipeline for the adolescent mouse nervous system project☆24Jun 28, 2018Updated 7 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13May 2, 2019Updated 6 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Sep 24, 2019Updated 6 years ago
- Panoramic stitching of single cell data☆297Jul 14, 2025Updated 8 months ago
- R package for single-cell RNA-sequencing analysis☆15Sep 30, 2025Updated 5 months ago
- Code for the paper on t-SNE with variable degree of freedom☆12Jun 27, 2019Updated 6 years ago
- Auto-annotations from Mouse brain development☆12Jul 11, 2020Updated 5 years ago
- scover☆24Nov 3, 2023Updated 2 years ago
- ☆49Oct 29, 2025Updated 4 months ago
- Human cortical cell types☆25Aug 21, 2019Updated 6 years ago
- Hierarchical classification of cells☆28Aug 2, 2024Updated last year
- ☆11May 30, 2023Updated 2 years ago
- Single Cell Cluster Evaluation☆100Jul 28, 2021Updated 4 years ago
- An R-based interface for loom files☆68Jul 9, 2020Updated 5 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆317Nov 1, 2022Updated 3 years ago
- Lightweight Iterative Gene set Enrichment in R☆59Oct 3, 2024Updated last year