Alternatives and similar repositories for MetaNeighbor

Users that are interested in MetaNeighbor are comparing it to the libraries listed below

• alexisvdb / singleCellHaystack
  Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).
  ☆85Updated last year
• gillislab / MetaNeighbor
  A method to rapidly assess cell type identity using both functional and random gene sets
  ☆39Updated 8 months ago
• MarioniLab / scran
  Clone of the Bioconductor repository for the scran package.
  ☆43Updated last year
• JCVenterInstitute / NSForest
  A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…
  ☆65Updated 2 weeks ago
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆88Updated 2 months ago
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆87Updated 3 months ago
• edsgard / trendsceek
  Identify genes with spatial expression trends in single-cell gene expression data
  ☆50Updated 7 years ago
• crazyhottommy / scclusteval
  Single Cell Cluster Evaluation
  ☆97Updated 4 years ago
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆39Updated 2 years ago
• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆42Updated 3 years ago
• KlugerLab / DAseq
  ☆41Updated 4 years ago
• cssmillie / ulcerative_colitis
  ☆63Updated 4 years ago
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆31Updated last year
• quadbio / VoxHunt
  VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps
  ☆47Updated last year
• mojaveazure / loomR
  An R-based interface for loom files
  ☆67Updated 5 years ago
• bioinfoDZ / RISC
  A R package for integrated scRNA-seq data analysis using the RPCI algorithm
  ☆44Updated last year
• Teichlab / cellity
  ☆37Updated 9 years ago
• morris-lab / Capybara
  Capybara: A computational tool to measure cell identity and fate transitions
  ☆59Updated 3 years ago
• ggjlab / scMCA
  Mouse cell atlas
  ☆61Updated 5 years ago
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆55Updated 3 months ago
• cozygene / bisque
  An R toolkit for estimation of cell composition from bulk expression data
  ☆78Updated 3 months ago
• rikenbit / scTensor
  R package for detection of cell-cell interaction using Non-negative Tensor Decomposition
  ☆34Updated 2 months ago
• chris-mcginnis-ucsf / MULTI-seq
  R implementation of MULTI-seq sample classification workflow
  ☆64Updated last year
• lhe17 / nebula
  ☆42Updated 3 months ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆74Updated 4 years ago
• SCCAF / sccaf
  Single-Cell Clustering Assessment Framework
  ☆105Updated last year
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 2 years ago
• carmonalab / STACAS
  R package for semi-supervised single-cell data integration
  ☆88Updated last month
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆64Updated 10 months ago
• AllonKleinLab / SPRING_dev
  ☆70Updated last year