maggiecrow / MetaNeighbor
☆47Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for MetaNeighbor
- A method to rapidly assess cell type identity using both functional and random gene sets☆34Updated last year
- Clone of the Bioconductor repository for the scran package.☆40Updated 2 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆50Updated last month
- R package for specialised analysis of single cell data☆36Updated 2 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆34Updated last year
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆43Updated 7 months ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆53Updated last month
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆23Updated 5 months ago
- Cell type pipes for R☆51Updated 9 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆24Updated 3 weeks ago
- SCDC☆42Updated last year
- ☆57Updated 5 years ago
- An R-based interface for loom files☆63Updated 4 years ago
- Mosaic single cell data integration using non-overlapping features☆34Updated 2 years ago
- R package for pathway analysis in scRNA-seq data☆62Updated 2 months ago
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆54Updated last week
- ☆59Updated 4 years ago
- Identify genes with spatial expression trends in single-cell gene expression data☆48Updated 6 years ago
- ☆37Updated 3 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆89Updated 3 years ago
- scWGCNA☆54Updated 2 years ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated last year
- ☆24Updated 2 months ago
- A tool for removing doublets from single-cell RNA-seq data☆69Updated 3 years ago
- Framework for sensitive DE testing (using neighbourhoods)☆58Updated 3 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆56Updated 4 months ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆41Updated 8 months ago
- scNMT-seq gastrulation☆42Updated last year