Kmer-File-Format / kff-toolsLinks
☆16Updated 2 years ago
Alternatives and similar repositories for kff-tools
Users that are interested in kff-tools are comparing it to the libraries listed below
Sorting:
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50Updated last year
- MONI: A Pangenomic Index for Finding MEMs☆37Updated 7 months ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆55Updated 2 weeks ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- Contains the description of a file format to store kmers and associated values☆33Updated 3 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆27Updated 6 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 5 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Updated 3 years ago
- ☆17Updated 4 years ago
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆68Updated last year
- linearize and simplify variation graphs using blocked partial order alignment☆59Updated 3 months ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- ☆28Updated last year
- Parallel Sequence to Graph Alignment☆36Updated 2 years ago
- Differential k-mer analysis☆37Updated last year
- Fast and exact gap-affine partial order alignment☆56Updated last week
- Efficient low-divergence mapping of long reads in minimizer space☆68Updated 2 years ago
- GFA visualizer, GPU-accelerated using Vulkan☆74Updated 3 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 2 months ago
- Python wrapper for wavefront alignment using WFA2-lib☆37Updated last year
- Pan-Genomic Matching Statistics☆54Updated last year
- ☆62Updated 2 months ago
- A versatile compressor of third generation sequencing reads.☆51Updated last year
- Statistics and analysis for variation graphs☆46Updated 11 months ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Updated 8 months ago
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆17Updated 6 years ago
- Benchmarking pairwise aligners☆36Updated 9 months ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago