COMBINE-lab / kmers
A bit-packed k-mer representation (and relevant utilities) for rust
☆47Updated 4 months ago
Related projects ⓘ
Alternatives and complementary repositories for kmers
- Benchmarking pairwise aligners☆36Updated 7 months ago
- GFA insert into GenomicSQLite☆48Updated 3 years ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Updated last year
- Generate random test data for bioinformatics☆25Updated 5 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆34Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆34Updated 9 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- gia: Genomic Interval Arithmetic☆51Updated 3 months ago
- REINDEER REad Index for abuNDancE quERy☆57Updated 3 months ago
- Rust bindings to minimap2 library☆66Updated 3 months ago
- Filter of Pairwise Alignement☆44Updated 2 years ago
- Approximate nearest neighbour search for microbial genomes based on hash metric☆43Updated last week
- ☆28Updated last year
- Fast and exact gap-affine partial order alignment☆40Updated 2 weeks ago
- ☆18Updated this week
- Iterate over minimizers of a DNA sequence☆26Updated 4 months ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆29Updated this week
- A FASTA/FASTQ format parser library☆20Updated 8 months ago
- Snakemake pipeline for benchmarking read mappers☆16Updated 11 months ago
- ☆43Updated last year
- GBWT in Rust☆42Updated this week
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- Rust wrapper for the next generation (still currently in C++)☆20Updated this week
- bioinformatics toolkit in rust☆78Updated 6 months ago
- Bidirectional WFA (Paper)☆41Updated 6 months ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 2 years ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆44Updated last month
- GBWT-based handle graph☆30Updated 2 weeks ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆51Updated 2 years ago