COMBINE-lab / kmers
A bit-packed k-mer representation (and relevant utilities) for rust
☆48Updated 10 months ago
Alternatives and similar repositories for kmers
Users that are interested in kmers are comparing it to the libraries listed below
Sorting:
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Updated last year
- gia: Genomic Interval Arithmetic☆62Updated 8 months ago
- Benchmarking pairwise aligners☆36Updated 3 months ago
- Iterate over minimizers of a DNA sequence☆29Updated 10 months ago
- Toolkit for manipulating FASTA and SAM files☆18Updated last year
- ☆21Updated 4 months ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Fasten toolkit, for streaming operations on fastq files☆79Updated last month
- bioinformatics toolkit in rust☆90Updated 2 weeks ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last month
- Alignment-based gene expression quantification☆27Updated last month
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆30Updated last year
- Generate random test data for bioinformatics☆26Updated 10 months ago
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆15Updated 4 years ago
- A FASTA/FASTQ format parser library☆20Updated last year
- an API for intersections of genomic data☆75Updated this week
- ntHash implementation in Rust☆36Updated 10 months ago
- GBWT in Rust☆43Updated last month
- ☆46Updated 2 years ago
- Bidirectional WFA (Paper)☆46Updated 11 months ago
- REINDEER REad Index for abuNDancE quERy☆57Updated 9 months ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆24Updated 2 weeks ago
- Fast and exact gap-affine partial order alignment☆50Updated last month
- Snakemake pipeline for benchmarking read mappers☆16Updated last year
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆30Updated 3 months ago
- Compacted and colored de Bruijn graph construction and querying☆82Updated last week
- GBWT-based handle graph☆31Updated last month
- Symmetric DUST for finding low-complexity regions in DNA sequences☆41Updated last year