A bit-packed k-mer representation (and relevant utilities) for rust
☆47Jun 26, 2024Updated 2 years ago
Alternatives and similar repositories for kmers
Users that are interested in kmers are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Oct 14, 2020Updated 5 years ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated 2 years ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 3 years ago
- Rust in bioinformatics and computational biology☆19Oct 22, 2022Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆36Aug 4, 2021Updated 5 years ago
- GBZ file format for pangenome graphs☆46Apr 18, 2026Updated 3 months ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆57Mar 13, 2025Updated last year
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- ☆22Jul 28, 2022Updated 4 years ago
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 3 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆44Jul 31, 2026Updated last week
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jul 12, 2026Updated 3 weeks ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24May 30, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Rust bindings to minimap2 library☆113May 3, 2026Updated 3 months ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆47May 13, 2026Updated 2 months ago
- ☆21Dec 26, 2025Updated 7 months ago
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated 2 years ago
- ntHash implementation in Rust☆36Jul 12, 2024Updated 2 years ago
- De Bruijn graphs in Rust