iqbal-lab-org / cobsLinks
COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
☆20Updated 6 months ago
Alternatives and similar repositories for cobs
Users that are interested in cobs are comparing it to the libraries listed below
Sorting:
- Parallel/Homoplasic SNP Finder☆19Updated 2 years ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆25Updated 8 months ago
- Variant call verification☆16Updated 3 weeks ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆24Updated 6 months ago
- software to identify primers that can distinguish genomes☆21Updated 4 months ago
- Sketch-based surveillance platform☆13Updated 5 months ago
- k-mers and the like☆22Updated 2 weeks ago
- Host depletion optimised for clinical metagenomic sequencing applications☆16Updated 6 months ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆22Updated this week
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated 2 weeks ago
- Visualize microbial evolution at the SNP level!☆14Updated 3 weeks ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 3 weeks ago
- MetagenOmic read Re-Assigner and abundance quantifier☆19Updated 4 months ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated 3 weeks ago
- A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement.☆10Updated last month
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…☆11Updated 8 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 6 years ago
- Basecalling configuration prediction through FASTQ files☆19Updated 2 weeks ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated 7 months ago
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆18Updated 5 months ago
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆17Updated 2 months ago
- Rapid discovery of reciprocal best blast pairs.☆10Updated 6 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last year
- Embedding-based indexing for compact storage, rapid querying, and curation of bacterial pan-genomes☆10Updated last month
- ☆12Updated 6 months ago
- A tool to detect acquired AMR genes directly from long read sequencing data.☆15Updated last week
- metagenome population recombination rate estimation pipeline☆12Updated 3 weeks ago
- Iterate over minimizers of a DNA sequence☆29Updated 10 months ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 6 months ago
- Computation of average nucleotide identity with the use of MMseqs2☆13Updated 5 months ago