iqbal-lab-org / cobsLinks
COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
☆20Updated 7 months ago
Alternatives and similar repositories for cobs
Users that are interested in cobs are comparing it to the libraries listed below
Sorting:
- Sketch-based surveillance platform☆13Updated 6 months ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆25Updated 10 months ago
- Wavefront alignment algorithm (WFA) in Golang☆29Updated 8 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆25Updated 8 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆16Updated 7 months ago
- k-mers and the like☆22Updated 2 weeks ago
- software to identify primers that can distinguish genomes☆21Updated 5 months ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 7 months ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆23Updated last week
- Iterate over minimizers of a DNA sequence☆31Updated last year
- Basecalling configuration prediction through FASTQ files☆21Updated last month
- Variant call verification☆16Updated 2 months ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated last month
- Long read aligner for cyclic and acyclic pangenome graphs☆37Updated last year
- MetagenOmic read Re-Assigner and abundance quantifier☆19Updated 5 months ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 2 months ago
- convert variation graph alignments to coverage maps over nodes☆24Updated 3 weeks ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated 2 months ago
- Remove human reads from a sequencing run☆40Updated 9 months ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆17Updated 3 months ago
- ☆18Updated 5 months ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated 9 months ago
- Fast and exact gap-affine partial order alignment☆52Updated this week
- Visualize microbial evolution at the SNP level!☆15Updated 2 months ago
- Next Index to Query Kmer Intersection☆16Updated 2 years ago
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…☆11Updated 9 months ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆20Updated 3 months ago
- Rapid discovery of reciprocal best blast pairs.☆10Updated 8 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆52Updated 3 months ago