jts / dbgfm

Related projects: ⓘ

• lh3 / rmaxcut
  An experimental tool to find approximate max-cuts in a large graph
  ☆11Updated 3 years ago
• medvedevgroup / TwoPaCo
  A fast constructor of the compressed de Bruijn graph from many genomes
  ☆39Updated last year
• csirac / dynamicDBG
  Practical Dynamic de Bruijn Graphs
  ☆18Updated 3 years ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• Malfoy / BCALM
  de Bruijn CompAction in Low Memory
  ☆23Updated 8 years ago
• cosmo-team / cosmo
  Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.
  ☆51Updated 6 months ago
• ocxtal / comb
  comb aligner -- a graphical nucleotide sequence alignment tool
  ☆9Updated 7 years ago
• Malfoy / Miekki
  Minhash Index Extended to Knead Kmer Intersection
  ☆11Updated 4 years ago
• ekg / drawbwt
  vector illustrations of BWT based searching on small strings
  ☆16Updated 5 years ago
• gregorykucherov / spaced-seeds-for-metagenomics
  ☆14Updated 8 years ago
• ythuang0522 / StriDe
  StriDe Assembler
  ☆25Updated 6 years ago
• jltsiren / bwt-merge
  A tool for merging large BWTs
  ☆26Updated 3 years ago
• Kingsford-Group / splitsbt
  ☆18Updated 6 years ago
• cartoonist / psi
  Pan-genome Seed Index
  ☆17Updated 6 months ago
• medvedevgroup / UST
  ☆25Updated 3 years ago
• lh3 / gfa1
  This repo is deprecated. Please use gfatools instead.
  ☆16Updated 6 years ago
• medvedevgroup / bloomtree-allsome
  Sequence Bloom Trees with All/Some split
  ☆11Updated 5 years ago
• Malfoy / Blight
  De Bruijn graph representation in low memory
  ☆36Updated 2 months ago
• splatlab / debgr
  deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph
  ☆30Updated 3 years ago
• mklarqvist / djinn
  C++ library for analysing and storing large-scale cohorts of sequence variant data
  ☆17Updated 5 years ago
• mkirsche / sapling
  SAPLING: Suffix Array Piecewise Linear INdex for Genomics
  ☆25Updated 4 years ago
• Malfoy / PAC
  ☆10Updated 6 months ago
• thegenemyers / DAMAPPER
  Long read to reference genome mapping tool
  ☆13Updated 6 months ago
• langmead-lab / vargas
  ☆25Updated 3 years ago
• bede / tictax
  Streaming sequence classification with web services ✓📌
  ☆19Updated last year
• mohsenzakeri / Movi
  Fast and cache-efficient full-text pangenome index
  ☆25Updated last week
• bkehr / popins
  Population-scale detection of novel sequence insertions
  ☆27Updated 2 years ago
• vgteam / xg-old
  succinct labeled graphs with collections and paths
  ☆15Updated 5 years ago
• nicolaprezza / lz-rlbwt
  Run-length compressed BWT with LZ77 sampled suffix array
  ☆10Updated 2 years ago
• rvaser / rala
  Layout module for raw de novo genome assembly of long uncorrected reads.
  ☆21Updated 3 years ago