jts / dbgfmLinks
FM-index representation of a de Bruijn graph
☆27Updated 7 years ago
Alternatives and similar repositories for dbgfm
Users that are interested in dbgfm are comparing it to the libraries listed below
Sorting:
- A fast constructor of the compressed de Bruijn graph from many genomes☆41Updated 4 months ago
- comb aligner -- a graphical nucleotide sequence alignment tool☆9Updated 8 years ago
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 4 years ago
- Practical Dynamic de Bruijn Graphs☆18Updated 4 years ago
- A tool for merging large BWTs☆26Updated 4 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- StriDe Assembler☆25Updated 7 years ago
- de Bruijn CompAction in Low Memory☆23Updated 9 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- ☆18Updated 6 years ago
- Minhash Index Extended to Knead Kmer Intersection☆11Updated 5 years ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆51Updated last year
- ☆14Updated 9 years ago
- ☆25Updated 4 years ago
- Run-length compressed BWT with LZ77 sampled suffix array☆10Updated 3 years ago
- vector illustrations of BWT based searching on small strings☆16Updated 6 years ago
- Sequence Bloom Trees with All/Some split☆11Updated 6 years ago
- ☆10Updated last year
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago
- A succinct colored dBG representation☆12Updated 6 years ago
- ☆25Updated 4 years ago
- De Bruijn graph representation in low memory☆36Updated 11 months ago
- Streaming sequence classification with web services ✓📌☆19Updated 2 years ago
- Incremental construction of FM-index for DNA sequences☆70Updated last year
- Relative data structures based on the BWT☆12Updated 7 years ago
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Updated 5 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆12Updated last year
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- Read alignment with a multi-genome reference☆22Updated 5 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago