FM-index representation of a de Bruijn graph
☆26Aug 7, 2017Updated 8 years ago
Alternatives and similar repositories for dbgfm
Users that are interested in dbgfm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- vector illustrations of BWT based searching on small strings☆16Apr 29, 2019Updated 7 years ago
- ☆16Jun 22, 2023Updated 2 years ago
- Relative data structures based on the BWT☆12Apr 28, 2018Updated 8 years ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- Incremental construction of FM-index for DNA sequences☆72Jun 12, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- StriDe Assembler☆25Nov 23, 2017Updated 8 years ago
- ☆16Aug 8, 2025Updated 8 months ago
- BWT Text Indexing Library: a set of tools to work with BWT-based text indexes☆25Apr 25, 2022Updated 4 years ago
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Feb 18, 2020Updated 6 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- A tool for merging large BWTs☆24Nov 26, 2020Updated 5 years ago
- Contains the description of a file format to store kmers and associated values☆34Aug 17, 2022Updated 3 years ago
- A fuzzy Bruijn graph approach to long noisy reads assembly☆39Mar 15, 2017Updated 9 years ago
- a string to graph aligner☆41Jul 5, 2016Updated 9 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Python3 wrapper for GATB-Core.☆10Dec 16, 2017Updated 8 years ago
- Building the compacted de Bruijn graph efficiently from references or reads.☆92Feb 26, 2026Updated 2 months ago
- Comparing and combining multiple metagenomic datasets☆16Oct 12, 2022Updated 3 years ago
- MAW: a suite on the computation and application of Minimal Absent Words☆16Nov 1, 2021Updated 4 years ago
- ☆24Apr 2, 2021Updated 5 years ago
- variant integration methods for the 1000 Genomes Project☆21Jan 16, 2018Updated 8 years ago
- compacted de Bruijn graph construction in low memory☆100Nov 4, 2025Updated 5 months ago
- Naive de Bruijn graph implementation in python☆37Oct 2, 2017Updated 8 years ago
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55May 17, 2022Updated 3 years ago
- Bit packed vector of integral values☆29Jan 28, 2025Updated last year
- A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences☆14Apr 23, 2026Updated last week
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Aug 27, 2019Updated 6 years ago
- de Bruijn Graph-based read aligner☆36Sep 3, 2018Updated 7 years ago
- Lightweight C++ library for reading FASTA and FASTQ files.☆11Feb 16, 2019Updated 7 years ago
- efficient alignment of strings to partially ordered string graphs☆33Apr 22, 2026Updated last week
- ☆11Mar 10, 2024Updated 2 years ago
- Pacbio sequence alignment tool, please use "git clone" to copy and use the repository☆18Feb 17, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Detection of structural variants in cancer mate-pair and paired-end data☆13May 3, 2019Updated 6 years ago
- A demo implementation of Succinct de Bruijn Graphs.☆25Jun 30, 2013Updated 12 years ago
- A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.☆15May 4, 2016Updated 9 years ago
- This is the codebase for Faucet, described in our manuscript: https://academic.oup.com/bioinformatics/article/34/1/147/4004871, by Roye R…☆18May 21, 2017Updated 8 years ago
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Sep 23, 2017Updated 8 years ago
- Implementation of eBWT using Prefix-free parse (PFP)☆14Jul 14, 2025Updated 9 months ago
- Compact Tree Representation☆16Mar 16, 2017Updated 9 years ago