laurentnoe / yassLinks
genomic alignment similarity search tool
☆18Updated 4 months ago
Alternatives and similar repositories for yass
Users that are interested in yass are comparing it to the libraries listed below
Sorting:
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- Compute N50/NG50 and auN/auNG☆32Updated 2 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 5 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 5 months ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆34Updated 2 years ago
- ☆33Updated 4 years ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆44Updated 2 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Visualising discordant reads☆15Updated 10 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 2 weeks ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆40Updated 11 months ago
- finshingTool☆54Updated 8 years ago
- Ploidy agnostic phasing pipeline and algorithm☆48Updated last year
- ☆26Updated 5 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 8 months ago
- Haploidy and Size Completeness Estimation☆13Updated last year
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- compare sequences to a shared root reference sequence.☆24Updated 3 years ago
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago