laurentnoe / yassLinks
genomic alignment similarity search tool
☆18Updated 6 months ago
Alternatives and similar repositories for yass
Users that are interested in yass are comparing it to the libraries listed below
Sorting:
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 6 months ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 2 months ago
- ☆33Updated 4 years ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- R package to draw syntenic plots in 3 different styles☆42Updated 2 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆40Updated last year
- Fast and accurate tool for estimating genomic distances between genome-skims☆45Updated 2 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- Visualising discordant reads☆15Updated 10 years ago
- Haplotype-aware genome assembly toolkit☆30Updated 5 years ago
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…