laurentnoe / yassLinks
genomic alignment similarity search tool
☆18Updated 2 months ago
Alternatives and similar repositories for yass
Users that are interested in yass are comparing it to the libraries listed below
Sorting:
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- ☆32Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 2 months ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- compare sequences to a shared root reference sequence.☆24Updated 3 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 4 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 9 months ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆40Updated 3 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- ☆30Updated 5 years ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆45Updated last year
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆28Updated 3 months ago
- Visualising discordant reads☆15Updated 9 years ago
- Bayesian reconstruction of ancient DNA fragments☆28Updated 11 months ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- ☆26Updated 5 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 4 months ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- finshingTool☆54Updated 8 years ago
- Haploidy and Size Completeness Estimation☆13Updated last year