Alternatives and similar repositories for metagraph

Users that are interested in metagraph are comparing it to the libraries listed below

• refresh-bio / agc
  Assembled Genomes Compressor
  ☆176Updated last year
• DessimozLab / read2tree
  a tool for inferring species tree from sequencing reads
  ☆156Updated last month
• COMBINE-lab / pufferfish
  An efficient index for the colored, compacted, de Bruijn graph
  ☆111Updated last year
• ksahlin / strobealign
  Aligns short reads using dynamic seed size with strobemers
  ☆189Updated last week
• PacificBiosciences / ccs
  CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)
  ☆126Updated last year
• BenLangmead / aws-indexes
  Catalog of genomic indexes freely available from public clouds
  ☆66Updated last week
• lh3 / ropebwt3
  BWT construction and search
  ☆125Updated 2 weeks ago
• ncsa / NEAT
  NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.
  ☆66Updated this week
• KatyBrown / CIAlign
  ☆133Updated last year
• nf-core / pangenome
  Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.
  ☆102Updated 2 months ago
• thegenemyers / FASTGA
  Pairwise whole genome aligner
  ☆225Updated last week
• HKU-BAL / ClairS
  ClairS - a deep-learning method for long-read somatic small variant calling
  ☆102Updated last week
• ogotoh / spaln
  Genome mapping and spliced alignment of cDNA or amino acid sequences
  ☆109Updated this week
• HadrienG / InSilicoSeq
  A sequencing simulator
  ☆219Updated 7 months ago
• lbcb-sci / raven
  De novo genome assembler for long uncorrected reads
  ☆230Updated 2 years ago
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆77Updated 4 years ago
• steineggerlab / Metabuli
  Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
  ☆160Updated 3 weeks ago
• KirillKryukov / naf
  Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences
  ☆63Updated 5 months ago
• soedinglab / metaeuk
  MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
  ☆201Updated 5 months ago
• mgalardini / pyseer
  SEER, reimplemented in python 🐍🔮
  ☆129Updated 8 months ago
• jeffdaily / parasail-python
  Python bindings for the parasail C library.
  ☆115Updated last year
• GSLBiotech / mafft
  Align multiple amino acid or nucleotide sequences.
  ☆70Updated 5 years ago
• smirarab / sepp
  Ensemble of HMM methods (SEPP, TIPP, UPP)
  ☆95Updated 5 months ago
• COMBINE-lab / cuttlefish
  Building the compacted de Bruijn graph efficiently from references or reads.
  ☆92Updated this week
• gear-genomics / tracy
  Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files
  ☆120Updated last month
• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆117Updated 10 months ago
• yangao07 / abPOA
  abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
  ☆134Updated 3 months ago
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆151Updated last week
• ekimb / rust-mdbg
  minimizer-space de Bruijn graphs (mdBG) for whole genome assembly
  ☆183Updated last year
• BioinformaticsToolsmith / MeShClust
  MeShClust: an intelligent tool for clustering DNA sequences
  ☆39Updated 4 years ago