ratschlab / metagraphLinks
Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly
☆180Updated this week
Alternatives and similar repositories for metagraph
Users that are interested in metagraph are comparing it to the libraries listed below
Sorting:
- An efficient index for the colored, compacted, de Bruijn graph☆109Updated last year
- Assembled Genomes Compressor☆169Updated 11 months ago
- Building the compacted de Bruijn graph efficiently from references or reads.☆89Updated 5 months ago
- BWT construction and search☆120Updated this week
- a tool for inferring species tree from sequencing reads☆152Updated last month
- Aligns short reads using dynamic seed size with strobemers☆181Updated this week
- NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.☆63Updated last week
- AStarix: Fast and Optimal Sequence-to-Graph Aligner☆74Updated 3 years ago
- ☆132Updated last year
- Pairwise whole genome aligner☆198Updated 3 weeks ago
- A repository for generating strobemers and evalaution☆79Updated last year
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆94Updated 5 months ago
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆130Updated last week
- Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences☆62Updated 3 months ago
- seqfu - Sequece Fastx Utilities☆121Updated 3 weeks ago
- Catalog of genomic indexes freely available from public clouds☆64Updated 2 months ago
- Error correction for Illumina RNA-seq reads☆67Updated last year
- Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.☆98Updated 2 weeks ago
- A console-based alignment viewer☆116Updated 4 months ago
- MeShClust: an intelligent tool for clustering DNA sequences☆39Updated 3 years ago
- Efficient phylogenetic tree inference for massive taxonomic datasets☆130Updated 6 months ago
- Nanopore Plasmid Sequencing☆34Updated 2 years ago
- Bidirectional WFA (Paper)☆48Updated last year
- SEER, reimplemented in python 🐍🔮☆125Updated 5 months ago
- Ensemble of HMM methods (SEPP, TIPP, UPP)☆94Updated 2 months ago
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 5 years ago
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆105Updated 5 months ago
- RNA secondary structure/sequence profiles for homology search and alignment☆115Updated 11 months ago
- Research release basecalling models and configurations☆115Updated 5 months ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆68Updated 3 years ago