ratschlab / metagraphLinks
Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly
☆217Updated this week
Alternatives and similar repositories for metagraph
Users that are interested in metagraph are comparing it to the libraries listed below
Sorting:
- Assembled Genomes Compressor☆178Updated last year
- An efficient index for the colored, compacted, de Bruijn graph☆111Updated last year
- Aligns short reads using dynamic seed size with strobemers☆192Updated this week
- a tool for inferring species tree from sequencing reads☆156Updated 2 months ago
- BWT construction and search☆126Updated 3 weeks ago
- ☆133Updated last year
- NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.☆66Updated this week
- Catalog of genomic indexes freely available from public clouds☆67Updated 2 weeks ago
- De novo genome assembler for long uncorrected reads☆229Updated 2 years ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆202Updated 5 months ago
- seqfu - Sequece Fastx Utilities☆126Updated last week
- A console-based alignment viewer☆118Updated 7 months ago
- Pairwise whole genome aligner☆225Updated 2 weeks ago
- CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)☆126Updated last year
- Align multiple amino acid or nucleotide sequences.☆72Updated 5 years ago
- ClairS - a deep-learning method for long-read somatic small variant calling☆103Updated 2 weeks ago
- MeShClust: an intelligent tool for clustering DNA sequences☆39Updated 4 years ago
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆134Updated 3 months ago
- Building the compacted de Bruijn graph efficiently from references or reads.☆92Updated last week
- Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.☆103Updated 2 months ago
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆199Updated 3 years ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆155Updated last week
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆148Updated last year
- What should perfect bioinformatic tools be like?☆146Updated 3 months ago
- SEER, reimplemented in python 🐍🔮☆130Updated 8 months ago
- Error correction for Illumina RNA-seq reads☆67Updated last month
- VGP repository for the genome assembly working group☆193Updated 8 months ago
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆110Updated 2 weeks ago
- Code examples of fast and simple k-mer counters for tutorial purposes☆171Updated 5 years ago
- ☆126Updated 2 years ago