mlin / iitiiLinks
Implicit Interval Tree with Interpolation Index
☆41Updated 3 years ago
Alternatives and similar repositories for iitii
Users that are interested in iitii are comparing it to the libraries listed below
Sorting:
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently☆58Updated last year
- VariantStore: A Large-Scale Genomic Variant Search Index☆39Updated 4 years ago
- REINDEER REad Index for abuNDancE quERy☆58Updated last week
- Parallel Sequence to Graph Alignment☆37Updated 2 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 2 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆43Updated last year
- ☆28Updated 3 months ago
- Johns Hopkins University student-led genomics paper discussion group☆13Updated 5 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆41Updated 5 months ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆57Updated last year
- Sample Contamination Estimate from VCF☆19Updated 8 months ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- drunk on perbase pileups and lua expressions☆19Updated 2 months ago
- ☆25Updated 4 years ago
- Substring index for paths in a graph☆60Updated 2 months ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- A repository for generating strobemers and evalaution☆78Updated last year
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 4 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 4 months ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Updated 5 years ago
- Benchmarking pairwise aligners☆36Updated 5 months ago
- The Modular Aligner and The Modular SV Caller☆46Updated last year