jltsiren / relative-fmView external linksLinks
Relative data structures based on the BWT
☆12Apr 28, 2018Updated 7 years ago
Alternatives and similar repositories for relative-fm
Users that are interested in relative-fm are comparing it to the libraries listed below
Sorting:
- A tool for merging large BWTs☆24Nov 26, 2020Updated 5 years ago
- compressed, queryable variation graphs☆11Jun 25, 2015Updated 10 years ago
- Compact Tree Representation☆16Mar 16, 2017Updated 8 years ago
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 10 years ago
- Run-length compressed BWT with LZ77 sampled suffix array☆10Apr 25, 2022Updated 3 years ago
- BWT Text Indexing Library: a set of tools to work with BWT-based text indexes☆25Apr 25, 2022Updated 3 years ago
- MAW: a suite on the computation and application of Minimal Absent Words☆16Nov 1, 2021Updated 4 years ago
- ☆24May 16, 2025Updated 9 months ago
- linear time suffix array construction algorithm☆12Oct 28, 2016Updated 9 years ago
- BWT-based index for graphs☆73Mar 12, 2025Updated 11 months ago
- FM-index representation of a de Bruijn graph☆26Aug 7, 2017Updated 8 years ago
- Wavelet tree based on a fixed block boosting technique☆16May 18, 2021Updated 4 years ago
- Efficient construction of the BWT using string compression☆21Jun 3, 2025Updated 8 months ago
- Dynamic succinct/compressed data structures☆115Dec 17, 2025Updated 2 months ago
- Parallel Wavelet Tree and Wavelet Matrix Construction☆25Jun 27, 2023Updated 2 years ago
- Genevieve client: using GenNotes, report ClinVar for individual genomes & add consensus notes☆10Aug 2, 2016Updated 9 years ago
- OpenGL and GPU debugging utilities☆14Oct 21, 2012Updated 13 years ago
- Data and scripts for the paper "Polymorphic Type Inference for Machine Code"☆13Apr 12, 2016Updated 9 years ago
- An (incomplete) Common Lisp implementation of the iCalendar RFC5545 specification.☆14Apr 19, 2019Updated 6 years ago
- Programming with LVars, by example☆36Jul 20, 2015Updated 10 years ago
- lightning☆11Oct 20, 2015Updated 10 years ago
- BlastGraph is a new tool for computing intensive approximate pattern matching in a sequence graph or a de-Bruijn graph. Given an oriented…☆12May 9, 2013Updated 12 years ago
- A hash map using the BooPHF perfect hash function☆13Sep 25, 2016Updated 9 years ago
- SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.☆12Sep 19, 2019Updated 6 years ago
- My personal dot files☆10Sep 13, 2022Updated 3 years ago
- Algorithms that work on generic C arrays☆11Feb 13, 2017Updated 9 years ago
- A full-featured IRC bot in Common Lisp☆17May 15, 2025Updated 9 months ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Nov 27, 2025Updated 2 months ago
- A C++ container-like data structure for storing a vector of bits with fast appending on both sides and fast insertion in the middle, all …☆26Apr 26, 2022Updated 3 years ago
- Automated Programming Framework☆15May 11, 2020Updated 5 years ago
- An Emacs buffer list☆20Sep 24, 2017Updated 8 years ago
- ☆15Mar 7, 2018Updated 7 years ago
- Optimal suffix sorting and LCP array construction for constant alphabets [IPL 2017]☆10Aug 17, 2018Updated 7 years ago
- Learning Finite State Machine Models from Data with a Genetic Algorithm☆11Dec 1, 2025Updated 2 months ago
- A diff tool that highlights changes at the token (rather than line) level☆13Dec 19, 2022Updated 3 years ago
- lemon lexicon for DBpedia☆27Oct 13, 2015Updated 10 years ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11May 2, 2017Updated 8 years ago
- dynamic-updateable-index☆11Nov 10, 2015Updated 10 years ago
- Discussion Seminar: Philosophy of Programming Lanugages☆14Jul 20, 2014Updated 11 years ago