Alternatives and similar repositories for relative-fm

Users that are interested in relative-fm are comparing it to the libraries listed below

• nicolaprezza / BWTIL
  BWT Text Indexing Library: a set of tools to work with BWT-based text indexes
  ☆25Updated 3 years ago
• ekg / succinct-graph
  compressed, queryable variation graphs
  ☆11Updated 10 years ago
• dominikkempa / faster-minuter
  Wavelet tree based on a fixed block boosting technique
  ☆16Updated 4 years ago
• jltsiren / bwt-merge
  A tool for merging large BWTs
  ☆26Updated 4 years ago
• nicolaprezza / lz-rlbwt
  Run-length compressed BWT with LZ77 sampled suffix array
  ☆11Updated 3 years ago
• jts / dbgfm
  FM-index representation of a de Bruijn graph
  ☆27Updated 8 years ago
• COMBINE-lab / SkipPatch
  dynamic-updateable-index
  ☆11Updated 9 years ago
• nicolaprezza / r-index
  An optimal space run-length Burrows-Wheeler transform full-text index
  ☆67Updated 2 years ago
• xxsds / DYNAMIC
  Dynamic succinct/compressed data structures
  ☆112Updated last year
• itomomoti / OnlineRlbwt
  Online construction of run-length BWT (RLBWT) and r-index. Plus, online LZ77 parsing based on RLBWT.
  ☆15Updated 7 years ago
• bingmann / cobs
  COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
  ☆84Updated last year
• dnbaker / sketch
  C++ Implementations of sketch data structures with SIMD Parallelism, including Python bindings
  ☆155Updated last year
• txje / c-minhash
  Simple and fast MinHash implementation in C with Python wrapper
  ☆13Updated last month
• RUSH-LAB / RAMBO
  ☆20Updated 5 years ago
• pelotoncycle / bsort
  Extremely fast inplace radix sort
  ☆42Updated 5 years ago
• dynatrace-research / set-sketch-paper
  SetSketch: Filling the Gap between MinHash and HyperLogLog
  ☆49Updated 4 years ago
• GuillaumeHolley / BlastGraph
  BlastGraph is a new tool for computing intensive approximate pattern matching in a sequence graph or a de-Bruijn graph. Given an oriented…
  ☆12Updated 12 years ago
• splatlab / mantis
  Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index
  ☆81Updated last year
• ot / emphf
  An efficient external-memory algorithm for the construction of minimal perfect hash functions
  ☆64Updated last year
• csirac / dynamicDBG
  Practical Dynamic de Bruijn Graphs
  ☆18Updated 4 years ago
• GuillaumeHolley / BloomFilterTrie
  An alignment-free, reference-free and incremental data structure for colored de Bruijn graph with application to pan-genome indexing.
  ☆44Updated 3 years ago
• fclaude / libcds
  Compact Data Structures Library
  ☆128Updated 10 years ago
• refresh-bio / RADULS
  Ultra fast MSD radix sorter
  ☆11Updated 5 years ago
• Poyias / mBonsai
  Compact Tree Representation
  ☆16Updated 8 years ago
• ekg / mmmulti
  memory mapped multimap, multiset, and implicit interval tree based on an in-place parallel sort
  ☆27Updated 4 years ago
• koeppl / stringsheet
  A cheatsheet for most common Stringology tasks
  ☆15Updated 4 years ago
• mpetri / FM-Index
  FM-Index full-text index implementation using RRR Wavelet trees (libcds) and fast suffix sorting (libdivsufsort) including experimental r…
  ☆107Updated 10 years ago
• davidecenzato / PFP-eBWT
  Implementation of eBWT using Prefix-free parse (PFP)
  ☆14Updated last month
• vicLeva / bqf
  Implementation of a Backpack Quotient Filter
  ☆12Updated last month
• stxxl / foxxll
  FOundation of stXXl and thriLL
  ☆14Updated last year