Alternatives and similar repositories for sketchy

Users that are interested in sketchy are comparing it to the libraries listed below

• hcdenbakker / colorid
  Experiments with using BIGSI data structure for metagenomic and QC applications
  ☆19Updated 11 months ago
• dib-lab / charcoal
  Remove contaminated contigs from genomes using k-mers and taxonomies.
  ☆58Updated last year
• natir / fpa
  Filter of Pairwise Alignement
  ☆44Updated 3 years ago
• ekg / edyeet
  base-accurate DNA sequence alignments using edlib and mashmap2
  ☆33Updated 4 years ago
• HudsonAlpha / fmlrc2
  ☆48Updated 2 years ago
• pangenome / smoothxg
  linearize and simplify variation graphs using blocked partial order alignment
  ☆58Updated 2 months ago
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated last month
• KoslickiLab / YACHT
  A mathematically characterized hypothesis test for organism presence/absence in a metagenome
  ☆30Updated last month
• mbhall88 / drprg
  Drug Resistance Prediction with Reference Graphs
  ☆21Updated last year
• esteinig / brick
  BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons
  ☆17Updated 3 months ago
• nebiolabs / ampseer
  Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…
  ☆14Updated last year
• JensUweUlrich / Taxor
  Fast and space-efficient taxonomic classification of long reads
  ☆43Updated 2 months ago
• will-rowe / hulk
  Histosketching Using Little Kmers
  ☆57Updated 2 years ago
• iqbal-lab-org / make_prg
  Code to create a PRG from a Multiple Sequence Alignment file
  ☆25Updated 2 weeks ago
• jermp / fulgor
  ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆51Updated 3 weeks ago
• PROBIC / mGEMS
  mGEMS Genomic epidemiology with mixed samples
  ☆16Updated 10 months ago
• CDCgov / seqsender
  Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
  ☆38Updated 2 months ago
• bcgsc / ntLink
  Minimizer-based assembly scaffolding and mapping using long reads
  ☆42Updated 9 months ago
• mbhall88 / lrge
  Genome size estimation from long read overlaps
  ☆58Updated last week
• bacpop / pp-sketchlib
  Library of sketching functions used by PopPUNK
  ☆31Updated 3 months ago
• bacpop / mandrake
  Mandrake 🌿/👨‍🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding
  ☆38Updated 4 months ago
• rpetit3 / fastq-scan
  Output FASTQ summary statistics in JSON format
  ☆30Updated 2 years ago
• bluenote-1577 / floria
  Strain-level haplotyping for metagenomes with short or long-reads.
  ☆52Updated 3 months ago
• bcgsc / ntEdit
  ✏️ Genome assembly polishing & SNV detection
  ☆69Updated 2 weeks ago
• epi2me-labs / kraken2-server
  Kraken2 Server
  ☆22Updated last year
• nf-core / bactmap
  A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
  ☆56Updated last week
• mbhall88 / nohuman
  Remove human reads from a sequencing run
  ☆40Updated 9 months ago
• rvicedomini / strainberry
  Automated strain separation of low-complexity metagenomes
  ☆51Updated 3 years ago
• jhuapl-bio / taxtriage
  TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…
  ☆37Updated 3 weeks ago
• tseemann / scapper
  Whole genome core alignments from multiple draft genomes
  ☆13Updated 8 years ago