Python3 wrapper for GATB-Core.
☆10Dec 16, 2017Updated 8 years ago
Alternatives and similar repositories for pyGATB
Users that are interested in pyGATB are comparing it to the libraries listed below
Sorting:
- ☆16Jun 22, 2023Updated 2 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Feb 2, 2026Updated last month
- Contains the description of a file format to store kmers and associated values☆34Aug 17, 2022Updated 3 years ago
- Minimum Bait Cover Toolkit Syotti.☆13Jan 22, 2025Updated last year
- ☆10Feb 23, 2024Updated 2 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Jul 12, 2021Updated 4 years ago
- Core library of the Genome Analysis Toolbox with de-Bruijn graph☆65Feb 1, 2025Updated last year
- Kart: A divide-and-conquer algorithm for NGS read mapping with high error tolerance☆26May 21, 2020Updated 5 years ago
- Fast metagenome analysis toolkit☆27Sep 3, 2024Updated last year
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 7 years ago
- modular k-mer count matrix and Bloom filter construction for large read collections☆86Dec 15, 2025Updated 2 months ago
- Comparing and combining multiple metagenomic datasets☆16Oct 12, 2022Updated 3 years ago
- The Dagstuhl Format for Assembly☆13Oct 16, 2017Updated 8 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Feb 8, 2026Updated 3 weeks ago
- Paired reads mapping on de Bruijn graph☆13Jan 15, 2019Updated 7 years ago
- ☆13Jan 20, 2016Updated 10 years ago
- Training and using TFFM/PSSM/4-bits + DNA shape classifiers☆13Jun 11, 2018Updated 7 years ago
- Simple matching of HTS samples based on HLA typing☆14Jan 4, 2017Updated 9 years ago
- de Bruijn Graph-based read aligner☆35Sep 3, 2018Updated 7 years ago
- FM-index representation of a de Bruijn graph☆26Aug 7, 2017Updated 8 years ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- Python bindings to minimap2☆16Sep 18, 2017Updated 8 years ago
- vector illustrations of BWT based searching on small strings☆16Apr 29, 2019Updated 6 years ago
- Analysis of Cancer Genomes; 2017 edition☆16Jan 21, 2018Updated 8 years ago
- ☆17Jan 29, 2026Updated last month
- Tool for fully-automated inference of species trees from raw genome assemblies☆44Feb 15, 2026Updated 2 weeks ago
- de Bruijn Graph REAd mapping Tool☆14Jul 12, 2017Updated 8 years ago
- Calculates the Variant Allele Fraction of variants in VCF files☆19Nov 28, 2024Updated last year
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆53Mar 12, 2024Updated last year
- A Rust library providing fully dynamic sets of k-mers with high locality☆47Feb 12, 2026Updated 2 weeks ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Feb 12, 2016Updated 10 years ago
- Biopet docs☆17Aug 2, 2018Updated 7 years ago
- Pacbio sequence alignment tool, please use "git clone" to copy and use the repository☆18Feb 17, 2019Updated 7 years ago
- genomic alignment similarity search tool☆18May 15, 2025Updated 9 months ago
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆71Nov 13, 2025Updated 3 months ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Nov 27, 2025Updated 3 months ago
- Response to blog post about Salmon☆37Sep 3, 2017Updated 8 years ago
- k-mer counting software☆40Feb 8, 2022Updated 4 years ago
- ☆73Mar 1, 2019Updated 7 years ago