Alternatives and similar repositories for drawbwt

Users that are interested in drawbwt are comparing it to the libraries listed below

• Kmer-File-Format / kff-reference
  Contains the description of a file format to store kmers and associated values
  ☆34Updated 3 years ago
• ocxtal / dozeu
  SIMD-parallel BLAST X-drop DP on sequence graphs
  ☆24Updated last year
• medvedevgroup / UST
  ☆24Updated 4 years ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 4 years ago
• RagnarGrootKoerkamp / minimizers
  Reference implementations of minimizer schemes to go with the mod-minimizers paper.
  ☆27Updated 7 months ago
• rob-p / BooM
  A hash map using the BooPHF perfect hash function
  ☆13Updated 9 years ago
• mohsenzakeri / Movi
  Fast, Cache-Efficient, and Scalable Queries on Pangenomes
  ☆34Updated 2 weeks ago
• langmead-lab / vargas
  ☆24Updated 2 months ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆31Updated last year
• medvedevgroup / TwoPaCo
  A fast constructor of the compressed de Bruijn graph from many genomes
  ☆42Updated 9 months ago
• pairwise-alignment / pa-bench
  Benchmarking pairwise aligners
  ☆36Updated 9 months ago
• jeizenga / wfalm
  Refinements of the WFA alignment algorithm with better complexity
  ☆26Updated 3 years ago
• Kmer-File-Format / kff-tools
  ☆16Updated 2 years ago
• edawson / mkmh
  Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.
  ☆24Updated 4 years ago
• csirac / dynamicDBG
  Practical Dynamic de Bruijn Graphs
  ☆18Updated 5 years ago
• cartoonist / psi
  Pan-genome Seed Index
  ☆20Updated 8 months ago
• prophyle / prophasm
  ProphAsm – a rapid computation of simplitigs directly from k-mer sets
  ☆25Updated 2 years ago
• biointec / browniealigner
  Alignment algorithm for short Illumina reads to a de Bruijn graph
  ☆17Updated 6 years ago
• algbio / SBWT
  Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)
  ☆24Updated 8 months ago
• jermp / fulgor
  ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆55Updated 3 weeks ago
• mkirsche / sapling
  SAPLING: Suffix Array Piecewise Linear INdex for Genomics
  ☆25Updated 5 years ago
• algbio / themisto
  Space-efficient pseudoalignment with a colored de Bruijn graph
  ☆52Updated 8 months ago
• alshai / r-index
  An optimal space run-length Burrows-Wheeler transform full-text index
  ☆27Updated 4 years ago
• Malfoy / Blight
  De Bruijn graph representation in low memory
  ☆35Updated last year
• gregorykucherov / spaced-seeds-for-metagenomics
  ☆13Updated 9 years ago
• ekg / HLA-zoo
  genome variation graphs constructed from HLA GRCh38 ALTs
  ☆23Updated 3 years ago
• lh3 / gfa1
  This repo is deprecated. Please use gfatools instead.
  ☆15Updated 7 years ago
• tongzhouxu / mashpit
  Sketch-based surveillance platform
  ☆13Updated 11 months ago
• ddiazdom / grlBWT
  Efficient construction of the BWT using string compression
  ☆20Updated 5 months ago
• ParBLiSS / PaSGAL
  Parallel Sequence to Graph Alignment
  ☆36Updated 2 years ago