dancooke / bioioLinks
Lightweight C++ library for reading FASTA and FASTQ files.
☆11Updated 6 years ago
Alternatives and similar repositories for bioio
Users that are interested in bioio are comparing it to the libraries listed below
Sorting:
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- reference free variant assembly☆34Updated 2 years ago
- my PhD thesis☆36Updated 6 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 5 months ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Updated 8 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 6 years ago
- Stupid Simple Structural Variant View☆25Updated 9 years ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 5 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- ☆36Updated 5 years ago
- ☆16Updated 3 weeks ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 2 months ago
- ☆14Updated 3 years ago
- Integrated Variant Caller☆17Updated 7 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- Recommended Graphtyper pipelines☆15Updated 4 years ago
- Using kallisto for metagenomic analysis☆49Updated 8 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 6 years ago
- Identifying, understanding, and correcting technical biases on the sex chromosomes in next-generation sequencing data☆23Updated 6 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆38Updated 4 years ago
- de Bruijn Graph-based read aligner☆34Updated 7 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆33Updated 3 years ago