mskilab-org / gGnomeLinks
R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework
☆41Updated last week
Alternatives and similar repositories for gGnome
Users that are interested in gGnome are comparing it to the libraries listed below
Sorting:
- ☆51Updated 6 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 4 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- ☆23Updated 9 months ago
- Immuological gene typing and annotation for genome assembly☆38Updated 6 months ago
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 6 months ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆58Updated 5 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago
- Long-read splice alignment with high accuracy☆63Updated 11 months ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated 2 months ago
- Structural variant caller☆55Updated 3 years ago
- Long read to rMATS☆32Updated 2 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Adapters for trimming☆30Updated 6 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 5 months ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated last month
- for visual evaluation of read support for structural variation☆54Updated last year
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 11 months ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- Structural variant merging tool☆54Updated last year
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- ☆35Updated 4 years ago
- ☆44Updated last year
- Fast and scalable variant annotation tool☆30Updated 3 years ago
- toolkit to process gtf files☆17Updated 3 years ago