mskilab-org / gGnomeLinks
R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework
☆41Updated this week
Alternatives and similar repositories for gGnome
Users that are interested in gGnome are comparing it to the libraries listed below
Sorting:
- ☆23Updated 8 months ago
- ☆51Updated 6 years ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆58Updated 5 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 6 months ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Long-read splice alignment with high accuracy☆64Updated 11 months ago
- Immuological gene typing and annotation for genome assembly☆37Updated 5 months ago
- ☆35Updated 4 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 10 months ago
- ☆23Updated 4 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last month
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆29Updated 11 months ago
- ☆19Updated 2 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- Structural variant merging tool☆53Updated last year
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- ☆44Updated 11 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- Structural variant (SV) analysis tools☆36Updated last year
- Evolutionary Transcriptomics with R☆45Updated this week
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- for visual evaluation of read support for structural variation☆54Updated last year
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 8 years ago