Iterate over minimizers of a DNA sequence
☆32Jul 12, 2024Updated last year
Alternatives and similar repositories for minimizer-iter
Users that are interested in minimizer-iter are comparing it to the libraries listed below
Sorting:
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Apr 24, 2025Updated 10 months ago
- Bitpacked sequence trait and implementation☆16Feb 27, 2026Updated 3 weeks ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated last year
- A small, auxiliary index to massively improve parallel fastq parsing☆31Mar 6, 2026Updated 2 weeks ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆20Jan 22, 2026Updated last month
- Contains the description of a file format to store kmers and associated values☆34Aug 17, 2022Updated 3 years ago
- Fast FASTX parsing and k-mer methods in Rust☆210Jan 27, 2026Updated last month
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆24Nov 20, 2025Updated 4 months ago
- ntHash implementation in Rust☆36Jul 12, 2024Updated last year
- ☆19Feb 15, 2025Updated last year
- Minimum plain text representation of kmer sets☆16Jan 30, 2025Updated last year
- Index kmtricks bf matrices☆46Feb 13, 2026Updated last month
- Rust bindings to minimap2 library☆109Mar 2, 2026Updated 2 weeks ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Oct 20, 2023Updated 2 years ago
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21Dec 3, 2025Updated 3 months ago
- Benchmarking pairwise aligners☆37Feb 8, 2025Updated last year
- A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence☆17Jun 29, 2021Updated 4 years ago
- A database for signatures of public genomic sources☆18Jan 1, 2026Updated 2 months ago
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated 2 weeks ago
- Simple and transparent support for compressed files.☆81Feb 27, 2026Updated 3 weeks ago
- A genomic minhashing implementation in Rust☆103Jun 17, 2025Updated 9 months ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Aug 7, 2023Updated 2 years ago
- Fasten toolkit, for streaming operations on fastq files☆81Oct 24, 2025Updated 4 months ago
- Approximate nearest neighbour search for microbial genomes based on hash metric☆62Mar 7, 2026Updated last week
- Rust implementation of the Haskell Rampart library that determines how intervals relate to each other.☆11Apr 21, 2022Updated 3 years ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 2 years ago
- Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.☆129Dec 30, 2020Updated 5 years ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Jun 26, 2024Updated last year
- Parallel Construction of Suffix Arrays in Rust☆26May 2, 2025Updated 10 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆16Nov 18, 2024Updated last year
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆60Updated this week
- Generate random test data for bioinformatics☆27Jun 17, 2024Updated last year
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 2 years ago
- GFA parser in Rust☆30May 26, 2023Updated 2 years ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆47Feb 12, 2026Updated last month
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆36Mar 9, 2026Updated last week