tlemane / kmindexLinks
Index kmtricks bf matrices
☆45Updated last week
Alternatives and similar repositories for kmindex
Users that are interested in kmindex are comparing it to the libraries listed below
Sorting:
- Fast and space-efficient taxonomic classification of long reads☆43Updated 3 weeks ago
- Pan-Genomic Matching Statistics☆53Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆52Updated 5 months ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆52Updated this week
- Library of sketching functions used by PopPUNK☆30Updated 5 months ago
- ☆30Updated last year
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆42Updated 3 weeks ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆23Updated last week
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Updated 6 months ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 2 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last week
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆47Updated last month
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆37Updated last year
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆25Updated 10 months ago
- Fast and scalable nanopore adaptive sampling☆34Updated 2 years ago
- Automated strain separation of low-complexity metagenomes☆50Updated 3 years ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆31Updated 2 weeks ago
- Fast viral consensus genome reconstruction☆23Updated 2 months ago
- A novel method for sequence similarity estimation☆28Updated last year
- ☆45Updated last month
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 3 months ago
- reference-based long read assemblies of bacterial genomes☆50Updated 4 years ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆93Updated 3 weeks ago
- Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop☆66Updated last month
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Find Unique genomic Regions☆30Updated 2 weeks ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆58Updated last year
- ☆28Updated 11 months ago
- Efficient, parallel compression for terabyte-scale data☆48Updated 4 months ago