Index kmtricks bf matrices
☆49Oct 6, 2026Updated 3 weeks ago
Alternatives and similar repositories for kmindex
Users that are interested in kmindex are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- modular k-mer count matrix and Bloom filter construction for large read collections☆90Sep 18, 2026Updated last month
- Iterate over minimizers of a DNA sequence☆34Jul 12, 2024Updated 2 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆38Oct 1, 2026Updated last month
- Contains the description of a file format to store kmers and associated values☆34Aug 17, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- NCBI Taxonomy History Browser☆10May 7, 2026Updated 5 months ago
- Minimum plain text representation of kmer sets☆20Jan 30, 2025Updated last year
- Differential k-mer analysis☆42Jan 29, 2024Updated 2 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆59Mar 13, 2025Updated last year
- kmer-counter☆19Updated this week
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Oct 20, 2023Updated 3 years ago
- ☆16Jun 22, 2023Updated 3 years ago
- compacted de Bruijn graph construction in low memory☆102Nov 4, 2025Updated 11 months ago
- Building the compacted de Bruijn graph efficiently from references or reads.☆101Oct 1, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Implementation of the u-index☆12Jul 19, 2025Updated last year
- Compacted and colored de Bruijn graph construction and querying☆101Oct 20, 2026Updated last week
- A Rust library providing fully dynamic sets of k-mers with high locality☆47May 13, 2026Updated 5 months ago
- BWT construction and search☆134Aug 30, 2026Updated 2 months ago
- Implementation of a Backpack Quotient Filter☆13Jun 24, 2026Updated 4 months ago
- A Rust implementation of SSHash☆20Oct 19, 2026Updated 2 weeks ago
- 雷 - kaminari (thunder/lightning)☆12May 4, 2026Updated 5 months ago
- ☆50Updated this week
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- REINDEER REad Index for abuNDancE quERy☆57Jul 6, 2025Updated last year
- ☆15Oct 22, 2026Updated last week
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆49Jun 19, 2026Updated 4 months ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆42Apr 17, 2024Updated 2 years ago
- A SIMD-accelerated library to compute random minimizers☆49Oct 26, 2026Updated last week
- Approximate nearest neighbour search for microbial genomes based on hash metric☆66Sep 19, 2026Updated last month
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year
- A k-mer search engine for all Sequence Read Archive public accessions☆46May 13, 2026Updated 5 months ago
- CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification …☆12Mar 20, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A fast constructor of the compressed de Bruijn graph from many genomes☆41Nov 27, 2025Updated 11 months ago
- Automated strain separation of low-complexity metagenomes☆52Nov 10, 2021Updated 4 years ago
- KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.☆20Oct 1, 2026Updated last month
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 7 months ago
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆46Mar 9, 2026Updated 7 months ago
- De Bruijn graph representation in low memory☆36Jul 6, 2024Updated 2 years ago
- Bifrost graph gene caller.☆102Aug 31, 2026Updated 2 months ago