Daniel-Liu-c0deb0t / cute-nucleotidesLinks
Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.
☆128Updated 4 years ago
Alternatives and similar repositories for cute-nucleotides
Users that are interested in cute-nucleotides are comparing it to the libraries listed below
Sorting:
- A very fast interval tree data structure☆125Updated 7 months ago
- Simple succinct data structures (in Rust)☆50Updated 9 months ago
- ☆50Updated 2 years ago
- Simple and transparent support for compressed files.☆80Updated 7 months ago
- FASTA and FASTQ parsing in Rust☆78Updated 6 months ago
- Rust utility code☆32Updated last year
- Fast FASTX parsing and k-mer methods in Rust☆195Updated last month
- Alignment-based gene expression quantification☆28Updated 3 weeks ago
- A genomic minhashing implementation in Rust☆98Updated 3 months ago
- Rust bindings to parasail, a SIMD-accelerated pairwise sequence alignment library.☆21Updated 9 years ago
- Hardware go brrr bounded context suffix array construction algorithm☆18Updated last year
- De Bruijn graphs in Rust☆70Updated last year
- A set of command line utilities based on Rust-Bio.☆198Updated last year
- Parallel Construction of Suffix Arrays in Rust☆26Updated 4 months ago
- Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.☆129Updated last week
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆135Updated last year
- A server implementation of the htsget protocol for bioinformatics in Rust☆45Updated this week
- The D4 Quantitative Data Format☆166Updated 4 months ago
- Rust bindings to minimap2 library☆101Updated last week
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated last year
- A pairwise sequence aligner written in Rust☆136Updated last month
- A library for easy, fast, and efficient reading & writing of PLINK Bed files☆81Updated 5 months ago
- Bioinformatics Algorithms implemented in Rust for Learners☆31Updated 4 years ago
- Fast and scalable minimal perfect hashing for massive key sets☆142Updated last year
- A library of common biomedical types.☆39Updated 5 months ago
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆20Updated 2 years ago
- Benchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)☆57Updated 2 years ago
- Single-Cell RNA-seq pseudo-aligner☆51Updated last year
- Compacted and colored de Bruijn graph construction and querying☆84Updated 2 weeks ago
- Rust implementation of a fast, easy, interval tree library nim-lapper☆62Updated 2 months ago