Daniel-Liu-c0deb0t / cute-nucleotidesLinks
Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.
☆129Updated 4 years ago
Alternatives and similar repositories for cute-nucleotides
Users that are interested in cute-nucleotides are comparing it to the libraries listed below
Sorting:
- Simple succinct data structures (in Rust)☆51Updated 9 months ago
- A very fast interval tree data structure☆126Updated 6 months ago
- ☆51Updated 2 years ago
- Simple and transparent support for compressed files.☆80Updated 6 months ago
- FASTA and FASTQ parsing in Rust☆79Updated 5 months ago
- Fast FASTX parsing and k-mer methods in Rust☆195Updated last month
- Rust utility code☆33Updated last year
- Alignment-based gene expression quantification☆29Updated 4 months ago
- Fast and scalable minimal perfect hashing for massive key sets☆141Updated last year
- Hardware go brrr bounded context suffix array construction algorithm☆18Updated last year
- Parallel Construction of Suffix Arrays in Rust☆26Updated 3 months ago
- Benchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)☆58Updated 2 years ago
- A server implementation of the htsget protocol for bioinformatics in Rust☆45Updated last week
- A genomic minhashing implementation in Rust☆99Updated 2 months ago
- De Bruijn graphs in Rust☆71Updated last year
- Rust bindings to parasail, a SIMD-accelerated pairwise sequence alignment library.☆22Updated 9 years ago
- Bioinformatics Algorithms implemented in Rust for Learners☆32Updated 4 years ago
- A library of common biomedical types.☆38Updated 4 months ago
- Rust bindings to minimap2 library☆101Updated last week
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆136Updated last year
- A bit-packed k-mer representation (and relevant utilities) for rust☆48Updated last year
- A set of command line utilities based on Rust-Bio.☆199Updated last year
- Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.☆128Updated this week
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆21Updated 2 years ago
- Fast approximate string searching☆50Updated last month
- Rust implementation of a fast, easy, interval tree library nim-lapper☆63Updated last month
- ☆22Updated 3 years ago
- The D4 Quantitative Data Format☆166Updated 4 months ago
- PtrHash minimal perfect hash function☆66Updated last month
- A pairwise sequence aligner written in Rust☆136Updated last month