jltsiren / bwt-merge

Related projects ⓘ

Alternatives and complementary repositories for bwt-merge

• rob-p / FQFeeder
  Self-contained, multi-threaded fasta/q parser
  ☆43Updated last month
• jts / dbgfm
  FM-index representation of a de Bruijn graph
  ☆27Updated 7 years ago
• cosmo-team / cosmo
  Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.
  ☆51Updated 8 months ago
• ekg / drawbwt
  vector illustrations of BWT based searching on small strings
  ☆16Updated 5 years ago
• jltsiren / relative-fm
  Relative data structures based on the BWT
  ☆12Updated 6 years ago
• cartoonist / kseqpp
  Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)
  ☆45Updated 8 months ago
• jltsiren / gcsa2
  BWT-based index for graphs
  ☆71Updated 2 weeks ago
• medvedevgroup / TwoPaCo
  A fast constructor of the compressed de Bruijn graph from many genomes
  ☆40Updated 2 years ago
• ddiazdom / grlBWT
  Efficient construction of the BWT using string compression
  ☆17Updated last month
• csirac / dynamicDBG
  Practical Dynamic de Bruijn Graphs
  ☆18Updated 4 years ago
• jermp / lphash
  Fast and compact locality-preserving minimal perfect hashing for k-mer sets.
  ☆43Updated last year
• splatlab / mantis
  Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index
  ☆80Updated 8 months ago
• vgteam / gssw
  efficient alignment of strings to partially ordered string graphs
  ☆33Updated 2 years ago
• nicolaprezza / r-index
  An optimal space run-length Burrows-Wheeler transform full-text index
  ☆58Updated last year
• ParBLiSS / PaSGAL
  Parallel Sequence to Graph Alignment
  ☆35Updated last year
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• ParBLiSS / kmerind
  Parallel k-mer indexing for biological sequences
  ☆12Updated 5 years ago
• edawson / gfakluge
  A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
  ☆51Updated 2 years ago
• jltsiren / gbwt
  Substring index for paths in a graph
  ☆60Updated 2 weeks ago
• mohsenzakeri / Movi
  Fast and cache-efficient full-text pangenome index
  ☆25Updated last week
• COMBINE-lab / SkipPatch
  dynamic-updateable-index
  ☆11Updated 9 years ago
• Kmer-File-Format / kff-tools
  ☆17Updated last year
• jermp / sshash
  A compressed, associative, exact, and weighted dictionary for k-mers.
  ☆84Updated last month
• jeizenga / wfalm
  Refinements of the WFA alignment algorithm with better complexity
  ☆26Updated 2 years ago
• Malfoy / Blight
  De Bruijn graph representation in low memory
  ☆36Updated 4 months ago
• dominikkempa / faster-minuter
  Wavelet tree based on a fixed block boosting technique
  ☆16Updated 3 years ago
• rob-p / BooM
  A hash map using the BooPHF perfect hash function
  ☆12Updated 8 years ago
• ocxtal / dozeu
  SIMD-parallel BLAST X-drop DP on sequence graphs
  ☆24Updated 5 months ago
• ocxtal / libgaba
  Adaptive semi-global banded alignment on string graphs
  ☆63Updated 6 years ago
• HKU-BAL / MegaGTA
  HMM-guided metagenomic gene-targeted assembler using iterative de Bruijn graphs
  ☆17Updated 8 years ago