jltsiren / bwt-mergeLinks
A tool for merging large BWTs
☆25Updated 5 years ago
Alternatives and similar repositories for bwt-merge
Users that are interested in bwt-merge are comparing it to the libraries listed below
Sorting:
- Practical Dynamic de Bruijn Graphs☆18Updated 5 years ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆43Updated 2 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Updated 2 weeks ago
- Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)☆56Updated last year
- Efficient construction of the BWT using string compression☆20Updated 6 months ago
- A hash map using the BooPHF perfect hash function☆13Updated 9 years ago
- BWT-based index for graphs☆73Updated 9 months ago
- An experimental tool to find approximate max-cuts in a large graph☆10Updated 4 years ago
- Incremental construction of FM-index for DNA sequences☆72Updated last year
- A python toolkit for building and querying multi-string BWTs☆27Updated 8 years ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆53Updated last year
- De Bruijn graph representation in low memory☆35Updated last year
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 5 years ago
- Parallel Sequence to Graph Alignment☆36Updated 3 years ago
- vector illustrations of BWT based searching on small strings☆16Updated 6 years ago
- Adaptive semi-global banded alignment on string graphs☆67Updated 7 years ago
- Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index☆82Updated last year
- Substring index for paths in a graph☆60Updated last week
- Wavelet tree based on a fixed block boosting technique☆16Updated 4 years ago
- Self-contained, multi-threaded fasta/q parser☆48Updated last year
- An optimal space run-length Burrows-Wheeler transform full-text index☆66Updated 2 years ago
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆35Updated last month
- ☆24Updated 4 years ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Updated last year
- ☆16Updated 2 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Pan-genome Seed Index☆20Updated 9 months ago
- A fast, AVX2 and ARM Neon accelerated FM index library☆36Updated last year
- efficient alignment of strings to partially ordered string graphs☆33Updated 3 years ago
- BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper☆52Updated 3 years ago