koeppl / stringsheetLinks
A cheatsheet for most common Stringology tasks
☆14Updated 4 years ago
Alternatives and similar repositories for stringsheet
Users that are interested in stringsheet are comparing it to the libraries listed below
Sorting:
- An optimal space run-length Burrows-Wheeler transform full-text index☆67Updated 2 years ago
- Wavelet tree based on a fixed block boosting technique☆16Updated 4 years ago
- Implementation of eBWT using Prefix-free parse (PFP)☆14Updated 6 months ago
- R-Index-F Library for Pattern Matching☆12Updated last year
- Inducing enhanced suffix arrays for string collections [DCC'16, TCS 2017]☆26Updated last month
- vector illustrations of BWT based searching on small strings☆16Updated 6 years ago
- Implementation of a Backpack Quotient Filter☆13Updated 6 months ago
- Efficient construction of the BWT using string compression☆20Updated 7 months ago
- A tool for merging large BWTs☆24Updated 5 years ago
- Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays☆17Updated 6 months ago
- gsufsort: building suffix arrays, LCP-arrays and BWTs for string collections [AMB 2020]☆27Updated 11 months ago
- Online construction of run-length BWT (RLBWT) and r-index. Plus, online LZ77 parsing based on RLBWT.☆14Updated 7 years ago
- Paper Collection for Stringologists☆17Updated 2 weeks ago
- TU DOrtmund lossless COMPression framework☆19Updated last year
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆88Updated last year
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆35Updated 2 months ago
- Dynamic succinct/compressed data structures☆113Updated 3 weeks ago
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆90Updated 3 weeks ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆43Updated 2 years ago
- DartMinHash: Fast Sketching for Weighted Sets☆12Updated last month
- Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)☆56Updated last year
- A hash map using the BooPHF perfect hash function☆13Updated 9 years ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Updated last year
- Simple succinct data structures (in Rust)☆53Updated 2 weeks ago
- A lightweight suffix-sorting library enhanced with LCP construction☆12Updated 5 years ago
- ☆24Updated 4 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- ☆16Updated 2 years ago
- ☆14Updated 5 years ago
- Compact Tree Representation☆16Updated 8 years ago