aet21 / SCENTLinks
Estimation of Single-Cell Potency with Single Cell Entropy
☆43Updated 2 years ago
Alternatives and similar repositories for SCENT
Users that are interested in SCENT are comparing it to the libraries listed below
Sorting:
- Aligning gene expression trajectories of single-cell reference and query systems☆80Updated 4 months ago
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- R package for Protein activity analysis of single-cell RNAseq.☆85Updated 3 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- ☆37Updated 3 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 4 years ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆65Updated 3 years ago
- Spatial transcriptomics of heart tissue☆28Updated 3 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆57Updated last month
- FitDevo: accurate inference of single-cell developmental potential using sample-specific gene weight☆16Updated last year
- R package for pathway analysis in scRNA-seq data☆76Updated last year
- ☆32Updated 10 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆29Updated 4 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆35Updated last month
- ☆22Updated 2 years ago
- ☆32Updated 3 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆26Updated last year
- ☆50Updated 5 years ago
- Method for de novo mutation calling from droplet based single cell RNA seq data☆14Updated 4 years ago
- Draw phylogenetic trees of tumor evolution☆86Updated 2 years ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆53Updated 11 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Updated 10 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 4 years ago
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆21Updated 2 years ago
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆29Updated last year
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆84Updated 2 years ago
- ☆47Updated 3 years ago
- Construct Tumor Transition Zone Microenvironment☆49Updated 6 months ago
- Visualize the results of cell-cell communication analysis☆24Updated 2 years ago