BayraktarLab / cell2fateLinks
Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
☆85Updated 10 months ago
Alternatives and similar repositories for cell2fate
Users that are interested in cell2fate are comparing it to the libraries listed below
Sorting:
- Aligning gene expression trajectories of single-cell reference and query systems☆81Updated 5 months ago
- Analysis of cell-cell communication at single-cell resolution☆106Updated last year
- R package for pathway analysis in scRNA-seq data☆77Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆69Updated 3 months ago
- ☆60Updated last month
- Gene regulatory network containing signed transcription factor-target gene interactions☆97Updated 8 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆79Updated this week
- ☆88Updated last week
- Gene group activity utility functions for Scanpy☆100Updated last year
- R implementation of GeneTrajectory☆68Updated last year
- Direct estimation of mean and covariance from single cell RNA seq experiments☆128Updated 9 months ago
- Functional Inference of Gene Regulation☆51Updated last year
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆81Updated last year
- Context specific and dynamic gene regulatory network reconstruction and analysis☆127Updated 2 months ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆54Updated last year
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆58Updated last week
- Metacells - Single-cell RNA Sequencing Analysis☆117Updated last year
- trajectory inference☆105Updated last year
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆63Updated last year
- Python implementation of Milo for differential abundance testing on KNN graph☆81Updated 11 months ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆78Updated 6 months ago
- R package for semi-supervised single-cell data integration☆95Updated last week
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- Single cell omics biology annotations☆53Updated 9 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆35Updated 3 weeks ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆82Updated 9 months ago
- Metacell - Single-cell mRNA Analysis☆120Updated last year
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆88Updated 3 years ago
- ☆48Updated 3 months ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆73Updated 4 years ago