BayraktarLab / cell2fateLinks
Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
☆79Updated 5 months ago
Alternatives and similar repositories for cell2fate
Users that are interested in cell2fate are comparing it to the libraries listed below
Sorting:
- Gene regulatory network containing signed transcription factor-target gene interactions☆86Updated 3 months ago
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- R implementation of GeneTrajectory☆63Updated last year
- Context specific and dynamic gene regulatory network reconstruction and analysis☆121Updated last week
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆63Updated 3 weeks ago
- Analysis of cell-cell communication at single-cell resolution☆104Updated 11 months ago
- ☆82Updated last week
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆73Updated last month
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆76Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated 2 weeks ago
- Metacells - Single-cell RNA Sequencing Analysis☆111Updated 11 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆32Updated last year
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 6 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆116Updated 3 months ago
- R package for semi-supervised single-cell data integration☆88Updated 2 weeks ago
- Multi-resolution Variational Inference☆23Updated 2 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆56Updated 4 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Pan-Cancer Single Cell Classifier☆77Updated last year
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- trajectory inference☆104Updated 7 months ago
- This repository contains all code used for the Human Lung Cell Atlas project.☆53Updated 2 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆106Updated 2 years ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆76Updated 4 months ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆66Updated 7 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 2 months ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆50Updated 9 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 8 months ago
- Gene group activity utility functions for Scanpy☆84Updated 8 months ago