BayraktarLab / cell2fateLinks
Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
☆83Updated 9 months ago
Alternatives and similar repositories for cell2fate
Users that are interested in cell2fate are comparing it to the libraries listed below
Sorting:
- R package for pathway analysis in scRNA-seq data☆76Updated last year
- R implementation of GeneTrajectory☆68Updated last year
- Analysis of cell-cell communication at single-cell resolution☆105Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆80Updated 4 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆67Updated last month
- ☆85Updated last week
- Context specific and dynamic gene regulatory network reconstruction and analysis☆126Updated last month
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆34Updated last year
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆78Updated last week
- Gene regulatory network containing signed transcription factor-target gene interactions☆92Updated 7 months ago
- trajectory inference☆105Updated 11 months ago
- R package for semi-supervised single-cell data integration☆92Updated last week
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- ☆59Updated last year
- Pan-Cancer Single Cell Classifier☆81Updated last year
- Significance analysis for clustering single-cell RNA-sequencing data☆122Updated last year
- ☆48Updated 2 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆124Updated 7 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆134Updated 5 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 2 weeks ago
- Gene group activity utility functions for Scanpy☆99Updated last year
- Python implementation of Milo for differential abundance testing on KNN graph☆77Updated 10 months ago
- Metacells - Single-cell RNA Sequencing Analysis☆116Updated last year
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆53Updated last year
- Functional Inference of Gene Regulation☆49Updated last year
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆57Updated last month
- A tool for semi-automatic cell type harmonization and integration☆117Updated last month
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆62Updated last year
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆80Updated 11 months ago