Alternatives and similar repositories for IReNA

Users that are interested in IReNA are comparing it to the libraries listed below

• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆41Updated 6 months ago
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆46Updated last year
• UPSUTER / GEMLI
  ☆32Updated 6 months ago
• MagpiePKU / EpiTrace
  Cell age determination by scATAC-seq and bulk-ATAC-seq
  ☆32Updated 11 months ago
• forrest-lab / NATMI
  NATMI: Network Analysis Toolkit for the Multicellular Interactions
  ☆35Updated 4 years ago
• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆26Updated 9 months ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆73Updated 9 months ago
• gxiaolab / scAllele
  ☆37Updated last year
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆28Updated 8 months ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 2 years ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆27Updated 3 years ago
• JunyueCaoLab / EasySci
  Computational pipeline to process EasySci-RNA data.
  ☆21Updated last year
• shyhihihi / MERCI
  MERCI for tracing of mitochondrion transfer between single cancer and T cells
  ☆22Updated last year
• snehamitra / SCARlink
  ☆55Updated last month
• neurorestore / DE-analysis
  ☆39Updated 4 years ago
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆32Updated 4 years ago
• wenweixiong / MARVEL
  ☆49Updated last year
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆31Updated last year
• WanluLiuLab / scAtlasVAE
  ☆36Updated last month
• gabrielakinker / CCLE_heterogeneity
  ☆57Updated last year
• buenrostrolab / stimATAC_analyses_code
  All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs
  ☆41Updated 2 years ago
• califano-lab / single-cell-pipeline
  ☆50Updated 5 years ago
• colomemaria / epiAneufinder
  R package to detect breakpoints and assign somies to scATAC-seq data
  ☆40Updated 2 weeks ago
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆26Updated 3 years ago
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆40Updated 10 months ago
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆85Updated 2 months ago
• xyang2uchicago / BioTIP
  BioTIP: Biological Tipping-Point Identification and Characterization
  ☆21Updated last month
• chensujun / scRNA
  ☆32Updated 4 years ago
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆37Updated 4 years ago
• xichensf / magical
  R and MATLAB scripts for MAGICAL
  ☆11Updated last year