Danko-Lab / BayesPrism
A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression
☆173Updated 3 months ago
Alternatives and similar repositories for BayesPrism:
Users that are interested in BayesPrism are comparing it to the libraries listed below
- Scissor package☆207Updated 9 months ago
- ☆163Updated 6 months ago
- Clone of the Bioconductor repository for the SingleR package.☆184Updated 2 weeks ago
- A tool for detecting somatic variants in single cell data☆191Updated 5 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆138Updated last month
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆225Updated last year
- ☆225Updated 8 months ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆136Updated 3 years ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆151Updated 2 years ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆242Updated this week
- Scaling Single Cell Analysis to Millions of Cells☆184Updated this week
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆177Updated 2 weeks ago
- Gene set scoring for single-cell data☆143Updated 4 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆265Updated 2 years ago
- Quantifying metabolism activity at the single-cell resolution☆131Updated 6 months ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆205Updated last month
- reticulate-free single cell format conversion☆126Updated 2 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆193Updated 6 months ago
- Cell types enrichment analysis☆192Updated 9 months ago
- scDIOR: Single cell data IO softwaRe☆139Updated 3 years ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆154Updated 8 months ago
- Interfaces for HDF5-based Single Cell File Formats☆156Updated last year
- Multiome GRN inference.☆119Updated 10 months ago
- A Bayesian model for compositional single-cell data analysis☆156Updated last year
- chromatin Variability Across Regions (of the genome!)☆168Updated 7 months ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆221Updated 2 months ago
- Some tools for plotting single-cell data☆167Updated last month
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆122Updated last month
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆160Updated last year