Alternatives and similar repositories for BayesPrism

Users that are interested in BayesPrism are comparing it to the libraries listed below

• cellgeni / schard
  reticulate-free single cell format conversion
  ☆201Updated last week
• aertslab / SCENICprotocol
  A scalable SCENIC workflow for single-cell gene regulatory network analysis
  ☆169Updated 3 years ago
• huayc09 / SeuratExtend
  ☆199Updated last month
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆236Updated 2 years ago
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆225Updated last month
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆152Updated 3 years ago
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆227Updated last year
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆176Updated 2 months ago
• neurorestore / Libra
  ☆181Updated 8 months ago
• xuranw / MuSiC
  Multi-subject Single Cell Deconvolution
  ☆278Updated last year
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆178Updated 5 months ago
• sunduanchen / Scissor
  Scissor package
  ☆247Updated last year
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆185Updated 2 years ago
• digitalcytometry / cytotrace2
  CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.
  ☆213Updated 2 weeks ago
• wheaton5 / souporcell
  Clustering scRNAseq by genotypes
  ☆192Updated 2 months ago
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆216Updated last year
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆307Updated 3 years ago
• neurorestore / Augur
  Cell type prioritization in single-cell data
  ☆132Updated last year
• aertslab / scenicplus
  SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…
  ☆243Updated 11 months ago
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆122Updated 2 years ago
• navinlabcode / copykat
  ☆259Updated 3 months ago
• digitalcytometry / ecotyper
  EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
  ☆226Updated last year
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆140Updated 4 years ago
• zktuong / ktplots
  Some tools for plotting single-cell data
  ☆176Updated 7 months ago
• bnprks / BPCells
  Scaling Single Cell Analysis to Millions of Cells
  ☆254Updated this week
• carmonalab / GeneNMF
  Methods to discover gene programs on single-cell data
  ☆170Updated 3 months ago
• aertslab / AUCell
  AUCell: score single cells with gene regulatory networks
  ☆180Updated last year
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆123Updated last year
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆199Updated last week
• mojaveazure / seurat-disk
  Interfaces for HDF5-based Single Cell File Formats
  ☆170Updated 2 years ago