Alternatives and similar repositories for BayesPrism

Users that are interested in BayesPrism are comparing it to the libraries listed below

• martinjzhang / scDRS
  Single-cell disease relevance score (scDRS)
  ☆176Updated 5 months ago
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆153Updated 3 years ago
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆179Updated 5 months ago
• aertslab / AUCell
  AUCell: score single cells with gene regulatory networks
  ☆183Updated last year
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆237Updated 2 years ago
• aertslab / SCENICprotocol
  A scalable SCENIC workflow for single-cell gene regulatory network analysis
  ☆171Updated 3 years ago
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆180Updated 3 months ago
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆215Updated last year
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆140Updated 4 years ago
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆188Updated 3 weeks ago
• sunduanchen / Scissor
  Scissor package
  ☆250Updated last year
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆208Updated 2 weeks ago
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆230Updated last month
• bnprks / BPCells
  Scaling Single Cell Analysis to Millions of Cells
  ☆257Updated 3 weeks ago
• huayc09 / SeuratExtend
  ☆203Updated 2 months ago
• xuranw / MuSiC
  Multi-subject Single Cell Deconvolution
  ☆284Updated last year
• neurorestore / Libra
  ☆181Updated 9 months ago
• neurorestore / Augur
  Cell type prioritization in single-cell data
  ☆138Updated last year
• swolock / scrublet
  Detect doublets in single-cell RNA-seq data
  ☆162Updated 5 years ago
• wheaton5 / souporcell
  Clustering scRNAseq by genotypes
  ☆193Updated 3 months ago
• aertslab / scenicplus
  SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…
  ☆245Updated 3 weeks ago
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆216Updated last month
• digitalcytometry / cytotrace2
  CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.
  ☆219Updated last month
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆230Updated last year
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆311Updated 3 years ago
• zktuong / ktplots
  Some tools for plotting single-cell data
  ☆177Updated 8 months ago
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆198Updated 3 weeks ago
• dpeerlab / SEACells
  SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
  ☆179Updated 10 months ago
• navinlabcode / copykat
  ☆269Updated 3 months ago
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆123Updated last year