A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression
☆236Apr 3, 2026Updated 2 months ago
Alternatives and similar repositories for BayesPrism
Users that are interested in BayesPrism are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scissor package☆267May 10, 2024Updated 2 years ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆188Aug 12, 2025Updated 9 months ago
- InstaPrism is an R package for fast implementation of BayesPrism☆56Jun 3, 2024Updated 2 years ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆434May 11, 2026Updated last month
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆244May 11, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- NicheNet: predict active ligand-target links between interacting cells☆656Jun 1, 2026Updated last week
- Cell type prioritization in single-cell data☆143Mar 26, 2026Updated 2 months ago
- Quantifying metabolism activity at the single-cell resolution☆180Feb 18, 2026Updated 3 months ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆541Jun 1, 2026Updated last week
- R package to infer biological activities from omics data using a collection of methods.☆297Dec 16, 2025Updated 5 months ago
- Assessing the purity of single cell population☆150Jun 3, 2022Updated 4 years ago
- Multi-subject Single Cell Deconvolution☆301Mar 4, 2024Updated 2 years ago
- scGSVA: Perform GSVA for single cell RNA seq☆82Mar 1, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R implementation of GeneTrajectory☆71May 9, 2026Updated last month
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆789Jan 6, 2024Updated 2 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆98Nov 30, 2023Updated 2 years ago
- A tool for semi-automatic cell type classification☆487May 22, 2026Updated 2 weeks ago
- Inferring CNV from Single-Cell RNA-Seq☆674Nov 14, 2025Updated 6 months ago
- Methods for detecting doublets in single-cell sequencing data☆252Jun 1, 2026Updated last week
- High dimensional weighted gene co-expression network analysis☆476Mar 13, 2026Updated 2 months ago
- A Toolbox for Spatial Transcriptomics Analysis☆168May 6, 2025Updated last year
- Spatial Transcriptomics Capture Location Deconvolution☆209Oct 20, 2025Updated 7 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- AUCell: score single cells with gene regulatory networks☆195Mar 9, 2024Updated 2 years ago
- Interpretation of cell states using reference single-cell maps☆321Dec 19, 2025Updated 5 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆242Aug 7, 2024Updated last year
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆192Updated this week
- Pan-Cancer Single Cell Classifier☆87May 30, 2024Updated 2 years ago
- Some tools for plotting single-cell data☆178May 17, 2025Updated last year
- Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome☆221Feb 4, 2026Updated 4 months ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆223Mar 2, 2026Updated 3 months ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆474Jun 6, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- R package to access DoRothEA's regulons☆156Feb 24, 2024Updated 2 years ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆623Mar 4, 2026Updated 3 months ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆257Jan 16, 2026Updated 4 months ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆254May 14, 2026Updated 3 weeks ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆122Apr 26, 2025Updated last year
- ☆34Feb 25, 2025Updated last year
- Metacell - Single-cell mRNA Analysis☆121Mar 16, 2026Updated 2 months ago