Alternatives and similar repositories for BayesPrism

Users that are interested in BayesPrism are comparing it to the libraries listed below

• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆234Updated 2 years ago
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆170Updated 2 weeks ago
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆150Updated 3 years ago
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆139Updated 3 years ago
• aertslab / SCENICprotocol
  A scalable SCENIC workflow for single-cell gene regulatory network analysis
  ☆168Updated 2 years ago
• sunduanchen / Scissor
  Scissor package
  ☆240Updated last year
• digitalcytometry / cytotrace2
  CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.
  ☆191Updated 2 weeks ago
• huayc09 / SeuratExtend
  ☆188Updated this week
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆215Updated last year
• neurorestore / Libra
  ☆177Updated 6 months ago
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆193Updated last month
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆168Updated 3 months ago
• xuranw / MuSiC
  Multi-subject Single Cell Deconvolution
  ☆275Updated last year
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆180Updated 2 years ago
• martinjzhang / scDRS
  Single-cell disease relevance score (scDRS)
  ☆166Updated 2 months ago
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆297Updated 3 years ago
• dviraran / xCell
  Cell types enrichment analysis
  ☆204Updated last year
• wheaton5 / souporcell
  Clustering scRNAseq by genotypes
  ☆190Updated this week
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆191Updated this week
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆224Updated last year
• digitalcytometry / ecotyper
  EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
  ☆218Updated last year
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆122Updated 2 years ago
• changwn / scFEA
  single cell Flux Estimation Analysis (scFEA) Try the below web server!
  ☆135Updated 2 years ago
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆211Updated 3 months ago
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆214Updated 3 weeks ago
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆119Updated last year
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆195Updated last year
• navinlabcode / copykat
  ☆255Updated last month
• zktuong / ktplots
  Some tools for plotting single-cell data
  ☆176Updated 5 months ago
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆197Updated 3 weeks ago