zakieh-tayyebi / CellSpaceLinks
Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
☆41Updated 9 months ago
Alternatives and similar repositories for CellSpace
Users that are interested in CellSpace are comparing it to the libraries listed below
Sorting:
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆65Updated 3 months ago
- ☆59Updated 4 months ago
- Single cell omics biology annotations☆51Updated 6 months ago
- R package IReNA☆28Updated 11 months ago
- ☆32Updated 9 months ago
- ☆38Updated 4 months ago
- Functional Inference of Gene Regulation☆48Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 10 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆89Updated 4 months ago
- scWGCNA☆61Updated 2 years ago
- Information-based dimensionality reduction☆29Updated 10 months ago
- cell type specific, trait-associated gene regulation☆29Updated 6 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated last month
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- ☆31Updated 7 months ago
- Whole mouse brain snATAC seq analysis☆27Updated 6 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated 2 months ago
- ☆58Updated last month
- Gene group activity utility functions for Scanpy☆93Updated 10 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆23Updated last month
- ☆36Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated 2 months ago
- Benchmark of GRNs using the GRETA pipeline☆28Updated this week
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago
- Parse ArchR arrow files to anndata h5ad☆15Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆51Updated 11 months ago
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆18Updated 2 years ago