zakieh-tayyebi / CellSpaceLinks
Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
☆41Updated 10 months ago
Alternatives and similar repositories for CellSpace
Users that are interested in CellSpace are comparing it to the libraries listed below
Sorting:
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- Single cell omics biology annotations☆50Updated 6 months ago
- ☆32Updated 9 months ago
- Functional Inference of Gene Regulation☆49Updated last year
- ☆32Updated 8 months ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆34Updated 3 years ago
- ☆59Updated 4 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆66Updated 4 months ago
- R package IReNA☆28Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆90Updated 5 months ago
- ☆36Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 11 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last month
- Whole mouse brain snATAC seq analysis☆27Updated 6 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated 3 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated 2 months ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆23Updated last year
- A modular tool for proportion analysis in single-cell sequencing data☆23Updated last month
- Parse ArchR arrow files to anndata h5ad☆15Updated last year
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆41Updated 3 months ago
- Gene group activity utility functions for Scanpy☆95Updated 10 months ago
- ☆39Updated 4 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆42Updated last year
- ☆60Updated 2 months ago
- scWGCNA☆61Updated 3 years ago
- R implementation of GeneTrajectory☆65Updated last year
- cell type specific, trait-associated gene regulation☆29Updated 7 months ago