Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
☆41Jan 11, 2025Updated last year
Alternatives and similar repositories for CellSpace
Users that are interested in CellSpace are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆68Apr 22, 2026Updated 3 months ago
- Code and data sharing of Liu et al. 2023 manuscript☆17Apr 18, 2023Updated 3 years ago
- ☆13Jan 23, 2025Updated last year
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆37Apr 2, 2025Updated last year
- Consensus peaks of chromatin accessibility in the human genome☆18Dec 1, 2025Updated 7 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆18Oct 17, 2024Updated last year
- Explore the Hi-Cs☆12Updated this week
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆87Apr 21, 2025Updated last year
- ☆59Nov 1, 2024Updated last year
- Identifying transcription factor binding sites from neural network contribution scores☆24Nov 8, 2025Updated 8 months ago
- The official implementation for "SANGO".☆11Mar 17, 2024Updated 2 years ago
- ☆19Mar 8, 2023Updated 3 years ago
- Paired Insertion Counting for snATAC-seq data☆19Mar 15, 2026Updated 4 months ago
- SIMBA: SIngle-cell eMBedding Along with features☆66Oct 16, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆132Jul 11, 2026Updated 2 weeks ago
- ☆16Sep 1, 2023Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆89Aug 10, 2025Updated 11 months ago
- Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)☆26Jul 20, 2026Updated last week
- R implementation of GeneTrajectory☆71May 9, 2026Updated 2 months ago
- single-cell Contamination Detection and Correction☆18Jan 15, 2025Updated last year
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆12Jul 29, 2023Updated 3 years ago
- This is the alpha version of the CellOracle package☆478Apr 30, 2026Updated 2 months ago
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆240Jun 9, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆32Dec 3, 2024Updated last year
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆29Feb 21, 2023Updated 3 years ago
- A repository for benchmarking spatial deconvolution and mapping tools☆37May 13, 2025Updated last year
- CIARA (Cluster Independent Algorithm for the identification of markers of RAre cell types) is an R package that identifies potential mar…☆18Jan 1, 2026Updated 6 months ago
- ☆53Oct 9, 2025Updated 9 months ago
- ☆21Jul 7, 2026Updated 3 weeks ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆261Jan 16, 2026Updated 6 months ago
- cell type specific, trait-associated gene regulation☆30Mar 31, 2025Updated last year
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.☆22Sep 12, 2025Updated 10 months ago
- Parse ArchR arrow files to anndata h5ad☆16Dec 14, 2023Updated 2 years ago
- Reworked clustering metrics for assessing performance in imbalanced settings☆18Jun 3, 2024Updated 2 years ago
- Information-based dimensionality reduction☆30Dec 14, 2024Updated last year
- Profile purification of single-cell spatial transcriptomics data☆51Jun 29, 2026Updated last month
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆41Jun 7, 2026Updated last month
- Latent Embedding Multivariate Regression☆102Jul 19, 2026Updated last week