The scripts used for the analyses in TOME project
☆24Nov 28, 2025Updated 5 months ago
Alternatives and similar repositories for tome_code
Users that are interested in tome_code are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Spatial RNA velocity☆10Oct 3, 2024Updated last year
- Dynamic inference from single-cell snapshots by optimal transport☆20Mar 14, 2024Updated 2 years ago
- Publically accessible code for DIISCO method☆13Oct 15, 2025Updated 7 months ago
- Spatial Single Cell transcriptomic library☆19Jan 15, 2026Updated 4 months ago
- ☆14Mar 8, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- ☆27Jun 4, 2023Updated 2 years ago
- The scripts used for analyzing JAX mouse dataset☆26Oct 24, 2024Updated last year
- tutorials for spateo package☆20Dec 25, 2024Updated last year
- ☆11Dec 8, 2023Updated 2 years ago
- R implementation of GeneTrajectory☆70May 9, 2026Updated last week
- ☆22Jan 10, 2025Updated last year
- Custom scripts used in "Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus"☆11Oct 15, 2020Updated 5 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Jul 8, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This repository contains codes used for the human fetal limb cell atlas.☆17Jan 28, 2025Updated last year
- Learn single-cell dynamics using neural differential equations☆69Jan 6, 2026Updated 4 months ago
- ☆34Oct 4, 2024Updated last year
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆31Aug 8, 2023Updated 2 years ago
- Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"☆13Apr 23, 2024Updated 2 years ago
- ☆39Sep 5, 2024Updated last year
- This is the BWA workflow used in the PanCancer project used to allign all the BAM files.☆11Dec 27, 2022Updated 3 years ago
- ☆10Apr 28, 2023Updated 3 years ago
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Jun 15, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- SClineager: a Bayesian hierarchical model that performs lineage tracing of single cells based on genetic markers☆10Apr 30, 2024Updated 2 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Sep 5, 2022Updated 3 years ago
- ☆19May 5, 2024Updated 2 years ago
- Easy & Pretrained SOTA Deep Learning for RNA strings☆12Apr 15, 2022Updated 4 years ago
- GREAT algorithm in Python☆15Oct 24, 2022Updated 3 years ago
- Parsimony on tree sequences☆13Jun 27, 2025Updated 10 months ago
- ☆18May 12, 2023Updated 3 years ago
- Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)☆45Apr 14, 2021Updated 5 years ago
- ☆10Mar 11, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆14Mar 11, 2026Updated 2 months ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆44Sep 18, 2025Updated 8 months ago
- ☆18Mar 31, 2024Updated 2 years ago
- Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas☆21Jul 3, 2022Updated 3 years ago
- ☆12Nov 9, 2022Updated 3 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆21Sep 12, 2023Updated 2 years ago
- ☆31Aug 2, 2023Updated 2 years ago