ChengxiangQiu / tome_code
The scripts used for the analyses in TOME project
☆23Updated 3 months ago
Alternatives and similar repositories for tome_code:
Users that are interested in tome_code are comparing it to the libraries listed below
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- ☆44Updated 10 months ago
- Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas☆18Updated 2 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆38Updated 2 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆16Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 3 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 4 months ago
- ☆30Updated last month
- Functional Inference of Gene Regulation☆40Updated 8 months ago
- The scripts used for analyzing JAX mouse dataset☆23Updated 4 months ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 2 months ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- cell type specific, trait-associated gene regulation☆20Updated last week
- ☆12Updated last year
- ☆36Updated 6 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆33Updated 4 years ago
- ☆17Updated 6 months ago
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆31Updated 8 months ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆18Updated 8 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆24Updated 2 weeks ago
- Functions for single cell data analysis☆31Updated 3 years ago
- ☆30Updated 2 years ago
- ☆24Updated 4 months ago
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- ☆24Updated last year
- single-cell clustering based on alternative splicing landscapes☆19Updated 11 months ago
- Accurate and fast cell marker gene identification with COSG☆42Updated this week
- Aligning gene expression trajectories of single-cell reference and query systems☆60Updated 4 months ago
- This repository holds the scripts used to analyze the data presented in "A multi-omic single-cell landscape of human gynecologic malignan…☆39Updated last year