Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
☆30Dec 3, 2024Updated last year
Alternatives and similar repositories for condiments
Users that are interested in condiments are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆63Aug 26, 2025Updated 7 months ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 9 months ago
- Python implementation of Gene Trajectory☆30Sep 4, 2024Updated last year
- Methods for detecting doublets in single-cell sequencing data☆241Feb 12, 2026Updated last month
- Vaeda method for computational doublet annotation☆19Feb 1, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Jan 15, 2024Updated 2 years ago
- R and MATLAB scripts for MAGICAL☆11Jun 26, 2024Updated last year
- A causal implicit generative model for simulating single-cell RNA-seq data guided by a gene regulatory network 🧬☆40Jul 28, 2025Updated 8 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆424Sep 4, 2025Updated 7 months ago
- MRtree R implementation☆13Mar 1, 2023Updated 3 years ago
- R implementation of GeneTrajectory☆69Apr 5, 2024Updated 2 years ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆22Jun 7, 2021Updated 4 years ago
- Analysis of cell-cell communication at single-cell resolution☆106Sep 10, 2024Updated last year
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Jan 14, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Codes used in LISTA project.☆15Apr 17, 2024Updated last year
- Single-Cell Inference of Class Switch Recombination☆21Feb 11, 2026Updated last month
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆35Jan 4, 2022Updated 4 years ago
- Spatial direct messaging detected by bivariate Moran☆31Jul 16, 2025Updated 8 months ago
- ☆12Jun 11, 2023Updated 2 years ago
- ☆17Dec 18, 2023Updated 2 years ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆44Oct 10, 2025Updated 6 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆83Aug 10, 2025Updated 8 months ago
- ☆17Jul 13, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ☆13Dec 16, 2021Updated 4 years ago
- scover☆24Nov 3, 2023Updated 2 years ago
- ☆15Feb 28, 2022Updated 4 years ago
- R package IReNA☆30Nov 13, 2024Updated last year
- scOntoMatch is an R package which unifies ontology annotation of scRNA-seq datasets to make them comparable across studies☆10Oct 27, 2023Updated 2 years ago
- Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data☆33Dec 15, 2025Updated 3 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆41Nov 18, 2025Updated 4 months ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆118Jan 22, 2024Updated 2 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Jan 11, 2025Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!☆12Nov 20, 2024Updated last year
- Comparison of methods for trajectory inference on single-cell data 🥇☆222Aug 30, 2023Updated 2 years ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆184Aug 12, 2025Updated 7 months ago
- ☆32Apr 3, 2026Updated last week
- ☆61Feb 13, 2026Updated last month
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆99Feb 18, 2026Updated last month
- ☆27Mar 18, 2022Updated 4 years ago