HectorRDB / condimentsLinks
Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
☆29Updated 8 months ago
Alternatives and similar repositories for condiments
Users that are interested in condiments are comparing it to the libraries listed below
Sorting:
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated 2 weeks ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆38Updated 4 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆22Updated last year
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- ☆41Updated 4 years ago
- Functional Inference of Gene Regulation☆46Updated last year
- Functions for single cell data analysis☆32Updated 4 years ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆42Updated 2 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 10 months ago
- ☆58Updated last year
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆11Updated 10 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆27Updated 3 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆27Updated 4 years ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- Robust identification of perturbed cell types in single-cell RNA-seq data☆32Updated 9 months ago
- ☆56Updated last year
- R package to detect breakpoints and assign somies to scATAC-seq data☆40Updated 3 weeks ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆56Updated 3 months ago
- scWGCNA☆61Updated 2 years ago
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆21Updated 2 years ago
- ☆50Updated 5 years ago
- Single-Cell Inference of Class Switch Recombination☆19Updated 5 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆87Updated last month
- Gene group activity utility functions for Scanpy☆84Updated 8 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆86Updated 2 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated 11 months ago
- ☆27Updated last week
- Method for de novo mutation calling from droplet based single cell RNA seq data☆14Updated 3 years ago