HectorRDB / condimentsLinks
Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
☆29Updated 10 months ago
Alternatives and similar repositories for condiments
Users that are interested in condiments are comparing it to the libraries listed below
Sorting:
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated last month
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆38Updated 4 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆23Updated last year
- Estimation of Single-Cell Potency with Single Cell Entropy☆42Updated 2 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- Single-Cell Inference of Class Switch Recombination☆19Updated 3 weeks ago
- Functional Inference of Gene Regulation☆46Updated last year
- Functions for single cell data analysis☆32Updated 4 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆56Updated 5 months ago
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- ☆57Updated last month
- cell type deconvolution for multi-condition bulk RNA-seq data☆28Updated 3 years ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆12Updated 11 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆33Updated 10 months ago
- ☆58Updated last year
- Single cell RNA-seq analysis bundle☆36Updated 6 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆27Updated 4 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- ☆41Updated 4 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- R package to detect breakpoints and assign somies to scATAC-seq data☆40Updated this week
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Gene group activity utility functions for Scanpy☆90Updated 9 months ago
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated 2 years ago
- Scripts used for the Differential NicheNet analyses in the Liver Atlas paper Guilliams et al., Cell 2022☆10Updated 3 years ago
- Method for de novo mutation calling from droplet based single cell RNA seq data☆14Updated 3 years ago
- ☆30Updated 5 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆87Updated 4 months ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago