HectorRDB / condiments
Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
☆26Updated 3 months ago
Alternatives and similar repositories for condiments:
Users that are interested in condiments are comparing it to the libraries listed below
- ☆40Updated 3 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆60Updated 5 months ago
- scWGCNA☆58Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆29Updated 8 months ago
- Functional Inference of Gene Regulation☆40Updated 8 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆34Updated 4 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆52Updated 6 months ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 2 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 5 months ago
- Functions for single cell data analysis☆31Updated 3 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆39Updated 2 months ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆31Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 3 months ago
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆21Updated 10 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆40Updated 2 weeks ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆23Updated 3 years ago
- ☆50Updated 7 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆31Updated 3 weeks ago
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆19Updated 2 years ago
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆18Updated 8 months ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- Method for de novo mutation calling from droplet based single cell RNA seq data☆13Updated 3 years ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆40Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated last year
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆19Updated 2 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆34Updated last year