HectorRDB / condiments
Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
☆25Updated last month
Related projects ⓘ
Alternatives and complementary repositories for condiments
- ☆39Updated 3 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆46Updated last month
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆49Updated 2 months ago
- Functions for single cell data analysis☆27Updated 3 years ago
- Functional Inference of Gene Regulation☆37Updated 4 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆24Updated last month
- R package for pathway analysis in scRNA-seq data☆62Updated 3 months ago
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated 10 months ago
- scWGCNA☆55Updated 2 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆34Updated 9 months ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆20Updated last year
- SCDC☆42Updated last year
- Gene group activity utility functions for Scanpy☆56Updated 3 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆26Updated 4 months ago
- Mosaic single cell data integration using non-overlapping features☆34Updated 2 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆25Updated last month
- Robust identification of perturbed cell types in single-cell RNA-seq data☆26Updated this week
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆31Updated 3 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆64Updated 7 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆45Updated last month
- Collection of scripts for analysis of pan fetal immune atlas☆25Updated 2 years ago
- Method for de novo mutation calling from droplet based single cell RNA seq data☆12Updated 3 years ago
- Inferring CNV data from single cell ATAC seq☆22Updated 9 months ago
- ☆37Updated 2 months ago
- ☆37Updated 10 months ago
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated last year
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆20Updated 2 weeks ago