KevinMenden / scadenLinks
Deep Learning based cell composition analysis with Scaden.
☆82Updated 11 months ago
Alternatives and similar repositories for scaden
Users that are interested in scaden are comparing it to the libraries listed below
Sorting:
- Single-Cell Clustering Assessment Framework☆105Updated last year
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆141Updated 2 years ago
- ☆58Updated 4 years ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆122Updated this week
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆77Updated 8 months ago
- ☆131Updated last year
- R package to access DoRothEA's regulons☆151Updated last year
- SingleCellNet: classify single cells across species and platforms☆138Updated 2 years ago
- Single-cell RNA-seq Gene Expression Recovery☆111Updated 10 months ago
- ☆47Updated 3 years ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆46Updated 4 years ago
- ☆94Updated 4 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆68Updated 4 years ago
- A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.☆93Updated last year
- ☆114Updated 4 months ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆131Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆64Updated 3 months ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- A benchmark of batch-effect correction methods for single-cell RNA sequencing data☆79Updated 3 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆113Updated 11 months ago
- Convert between AnnData and SingleCellExperiment☆140Updated last week
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆68Updated last year
- ☆61Updated 4 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆65Updated last week
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆158Updated last month
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆104Updated 5 months ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆147Updated 10 months ago
- data and model repository for single-cell data☆135Updated last year
- Tabula Muris Senis☆105Updated 2 years ago
- Predict RNA velocity through deep learning☆70Updated last year