jason-weirather / CIBERSORTLinks
A shell to facilitate loading / running CIBERSORT software in structured environments
☆26Updated 7 years ago
Alternatives and similar repositories for CIBERSORT
Users that are interested in CIBERSORT are comparing it to the libraries listed below
Sorting:
- Repository for Cibersortx☆61Updated 4 years ago
- ☆52Updated last year
- ☆48Updated 11 months ago
- scWGCNA☆61Updated 3 years ago
- ☆59Updated last year
- ☆30Updated 7 years ago
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆49Updated 4 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆31Updated 2 years ago
- R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters an…☆47Updated 3 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- ☆34Updated 6 years ago
- Bostongene cell deconvolution algorithm from RNAseq☆60Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆92Updated 6 months ago
- Unified access to several second-generation deconvolution methods☆88Updated last week
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- ☆39Updated 4 years ago
- Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)☆45Updated 4 years ago
- Immunology-related bioinformatics data and tools☆76Updated last year
- InstaPrism is an R package for fast implementation of BayesPrism☆47Updated last year
- ☆47Updated 5 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated 2 years ago
- R package for robust clustering of single cell RNA sequencing data☆36Updated last year