Alternatives and similar repositories for CIBERSORT

Users that are interested in CIBERSORT are comparing it to the libraries listed below

• forrest-lab / NATMI
  NATMI: Network Analysis Toolkit for the Multicellular Interactions
  ☆34Updated 4 years ago
• wenweixiong / MARVEL
  ☆49Updated 9 months ago
• McGranahanLab / TcellExTRECT
  ☆47Updated 4 months ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆42Updated last year
• neurorestore / DE-analysis
  ☆37Updated 3 years ago
• ysuzukilab / Cibersortx
  Repository for Cibersortx
  ☆58Updated 4 years ago
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆77Updated last year
• broadinstitute / single_cell_classification
  Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles
  ☆29Updated 5 years ago
• cailab-tamu / scTenifoldKnk
  R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.
  ☆45Updated 4 months ago
• UPSUTER / GEMLI
  ☆30Updated 3 months ago
• veltenlab / rnamagnet
  ☆25Updated 3 years ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆60Updated 2 years ago
• amf71 / cloneMap
  An R package to plot maps of clone distributions in somatic evolution
  ☆17Updated last year
• gabrielakinker / CCLE_heterogeneity
  ☆55Updated last year
• BostonGene / Kassandra
  Bostongene cell deconvolution algorithm from RNAseq
  ☆52Updated last year
• lanagarmire / SSrGE
  ☆34Updated 5 years ago
• supatt-lab / SingCellaR
  an integrative analysis tool for analysing large-scale single cell RNA-sequencing data
  ☆33Updated last year
• nghiavtr / SCmut
  ☆32Updated 5 years ago
• PCAWG-11 / Heterogeneity
  Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
  ☆43Updated 4 years ago
• KlugerLab / DAseq
  ☆40Updated 4 years ago
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated 11 months ago
• cboix / EPIMAP_ANALYSIS
  Epimap processing and analysis code repository
  ☆33Updated 2 years ago
• gxiaolab / scAllele
  ☆33Updated last year
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆45Updated last year
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆25Updated 3 years ago
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆30Updated 10 months ago
• foreverdream2 / dysfunction_interaction_test
  ☆29Updated 6 years ago
• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆45Updated 4 years ago
• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆40Updated 2 years ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆74Updated 4 years ago