The source code and results for different methods on annotating external testing datsets of human and mouse.
☆13Apr 21, 2021Updated 5 years ago
Alternatives and similar repositories for scDeepSort_performance_comparison
Users that are interested in scDeepSort_performance_comparison are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network☆108Jul 6, 2023Updated 2 years ago
- Cell-cell communication and lineage inference for scRNA-seq data☆25May 3, 2023Updated 3 years ago
- ☆47Jul 24, 2025Updated 10 months ago
- The source code and results of performance comparison on the detail of the process among scCATCH, CellAssign, Garnett, SingleR, scMap and…☆15Jan 8, 2023Updated 3 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Feb 22, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆30Mar 2, 2020Updated 6 years ago
- R package for integrating and comparing multiple single cell genomic datasets☆12Dec 27, 2020Updated 5 years ago
- Predicting transcription factor binding in single cells through deep learning☆14Oct 14, 2022Updated 3 years ago
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.☆30Oct 4, 2021Updated 4 years ago
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆25May 14, 2023Updated 3 years ago
- ☆11Dec 8, 2023Updated 2 years ago
- Human embryonic cell altas☆13Dec 31, 2019Updated 6 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆241May 8, 2023Updated 3 years ago
- Prediction of mRNA subcellular localization using deep recurrent neural networks☆15Jul 19, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- VEGA: VAE Enhanced by Gene Annotations☆18May 5, 2022Updated 4 years ago
- Consistent Clusters for scRNA-seq☆11Oct 6, 2021Updated 4 years ago
- UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data☆27Jul 26, 2023Updated 2 years ago
- Parametric Anatomical Modeling is a method to translate large-scale anatomical data into spiking neural networks. PAM is implemented as a…☆13Oct 12, 2018Updated 7 years ago
- A signal processing Android application☆11Dec 1, 2020Updated 5 years ago
- Scripts accompanying "Microanatomy of the human atherosclerotic plaque by single-cell transcriptomics"☆12Apr 20, 2022Updated 4 years ago
- Imputation of single cell RNA-sequencing data with autoencoder☆16Jun 23, 2021Updated 4 years ago
- BayesTME: A reference-free Bayesian method for analyzing spatial transcriptomics data☆14Apr 29, 2025Updated last year
- Trying to train LoRAs for ESM-2☆13Aug 6, 2023Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Python playground for cell-type-specific biology☆14Updated this week
- TensorFlow 2.0 implementations of various autoencoders.☆16Apr 22, 2019Updated 7 years ago
- Designer scaffolded DNA DX-based wireframe lattices☆14Jul 28, 2018Updated 7 years ago
- Tools for generating single-cell gene expression data☆34Jun 20, 2025Updated 11 months ago
- Comparison of dimensionality reduction methods☆30Mar 24, 2020Updated 6 years ago
- Simultaneous deep generative modeling and clustering of single cell genomic data☆33Nov 14, 2022Updated 3 years ago
- Contains files created with Design Spark PCB Capture Software☆13Aug 20, 2017Updated 8 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆37Jul 1, 2024Updated last year
- ☆19Dec 1, 2021Updated 4 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆131Mar 27, 2022Updated 4 years ago
- ☆16Jan 24, 2023Updated 3 years ago
- ☆26Apr 3, 2019Updated 7 years ago
- Manifold learning to detect cell-cell interactions.☆59May 19, 2026Updated 3 weeks ago
- RNA velocity estimation in Python☆176Oct 7, 2025Updated 8 months ago
- ☆15Jun 17, 2021Updated 4 years ago
- ☆14Jan 16, 2019Updated 7 years ago