☆59Nov 21, 2020Updated 5 years ago
Alternatives and similar repositories for deconv_benchmark
Users that are interested in deconv_benchmark are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- reorganize paper of deconvolution method☆11Dec 14, 2023Updated 2 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆16Apr 28, 2025Updated last year
- Identify major cellular signals in bulk transcriptomes☆11Jun 1, 2022Updated 4 years ago
- Unified access to several second-generation deconvolution methods☆111Aug 3, 2026Updated 3 weeks ago
- Simulate pseudo-bulk RNAseq samples from scRNAseq expression data☆19Aug 3, 2026Updated 3 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- R package for analysing proteomics data☆49Apr 17, 2023Updated 3 years ago
- Evaluation of Cell Type Annotation R Packages on Single Cell RNA-seq Data☆30Feb 20, 2024Updated 2 years ago
- List of papers on deconvolution of cell types in bulk RNA-seq based on single-cell signatures☆19Aug 28, 2020Updated 6 years ago
- R package: Manifold learning in R☆14Apr 7, 2020Updated 6 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆45Jul 6, 2020Updated 6 years ago
- SCDC☆50Jun 20, 2025Updated last year
- Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"☆17Jul 9, 2023Updated 3 years ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 4 years ago
- Deep joint-leaning single-cell multi-omics model☆16Jun 27, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Multi-subject Single Cell Deconvolution☆307Mar 4, 2024Updated 2 years ago
- Code associated with the manuscript Spatial Transcriptomics to define transcriptional patterns of zonation and structural components in t…☆22Aug 19, 2022Updated 4 years ago
- SOMatic is a tool for building Self-Organizing Maps and linking multiple maps.☆14Aug 29, 2024Updated 2 years ago
- A computational framework for bulk RNA-seq deconvolution☆11Dec 3, 2024Updated last year
- Deep Learning based cell composition analysis with Scaden.☆92Nov 5, 2024Updated last year
- Publication Page for ArchR Manuscript 2020☆24Aug 17, 2021Updated 5 years ago
- ☆12Mar 20, 2024Updated 2 years ago
- Scripts used for the Differential NicheNet analyses in the Liver Atlas paper Guilliams et al., Cell 2022☆10Jan 12, 2022Updated 4 years ago
- This repository contains code related to the publication "Comparative performance of the BGI and Illumina sequencing technology for singl…☆18Oct 12, 2021Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Gene expression deconvolution using dampened weighted least squares☆37Feb 4, 2021Updated 5 years ago
- A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …☆27Jan 31, 2026Updated 7 months ago
- Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)☆62Apr 3, 2024Updated 2 years ago
- InstaPrism is an R package for fast implementation of BayesPrism☆59Jun 3, 2024Updated 2 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Apr 16, 2020Updated 6 years ago
- ☆13Jun 11, 2023Updated 3 years ago
- Reconstruction of spatial context of gene expression with optimal transport☆11Mar 14, 2019Updated 7 years ago
- ☆12Dec 21, 2021Updated 4 years ago
- ☆13Jul 21, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ChIP-seq peak calling with GC effects adjustment☆10Jul 5, 2018Updated 8 years ago
- deconvolution for RNAseq and bisulfite sequencing☆12Aug 17, 2020Updated 6 years ago
- ☆64Jul 6, 2021Updated 5 years ago
- ☆14Dec 15, 2019Updated 6 years ago
- Single Cell Genomics for Enhancing Cell Composition Inference from Bulk Genomics Data☆21Jul 13, 2021Updated 5 years ago
- Highly accurate cell type proportion estimation with in silico data augmentation and deep neural networks☆18Jun 2, 2022Updated 4 years ago
- Bead-based single-cell atac processing☆33Jul 6, 2026Updated last month