favilaco / deconv_benchmark
☆58Updated 4 years ago
Alternatives and similar repositories for deconv_benchmark:
Users that are interested in deconv_benchmark are comparing it to the libraries listed below
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆62Updated 2 years ago
- Analysis of cell-cell communication at single-cell resolution☆100Updated 5 months ago
- ☆46Updated 2 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆83Updated 7 months ago
- ☆59Updated 5 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆60Updated 3 years ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆61Updated 2 years ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆77Updated last year
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆71Updated 2 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- Significance analysis for clustering single-cell RNA-sequencing data☆110Updated 5 months ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆102Updated 2 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆93Updated last year
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆68Updated 3 weeks ago
- R package for semi-supervised single-cell data integration☆79Updated last year
- ☆48Updated 5 months ago
- ☆114Updated 2 years ago
- BANKSY: spatial clustering☆86Updated 6 months ago
- ☆49Updated 4 months ago
- A Bayesian model for compositional single-cell data analysis☆155Updated last year
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆93Updated last year
- Framework for sensitive DE testing (using neighbourhoods)☆64Updated 6 months ago
- Single Cell Cluster Evaluation☆87Updated 3 years ago
- ☆60Updated last year
- Single-cell disease relevance score (scDRS)☆119Updated 3 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆93Updated 4 years ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆96Updated last week
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆59Updated last month
- Code for the MNN manuscript figures☆51Updated 6 years ago
- Gene expression deconvolution using dampened weighted least squares☆22Updated 4 years ago