zomithex / CIBERSORTLinks
☆28Updated 10 years ago
Alternatives and similar repositories for CIBERSORT
Users that are interested in CIBERSORT are comparing it to the libraries listed below
Sorting:
- Repository for Cibersortx☆62Updated 4 years ago
- Multiscale embedded gene co-expression network analysis☆57Updated 2 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 5 years ago
- ☆30Updated 7 years ago
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆32Updated 2 years ago
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆49Updated 4 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆26Updated 3 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- Bayesian network plot for the enrichment analysis results☆66Updated last year
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆63Updated 4 years ago
- epigenome analysis to rank transcription factors☆33Updated 2 years ago
- ☆48Updated last year
- A shell to facilitate loading / running CIBERSORT software in structured environments☆26Updated 7 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆81Updated 3 weeks ago
- Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.☆26Updated 4 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆119Updated 6 months ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆54Updated 7 years ago
- Immunology-related bioinformatics data and tools☆76Updated last year
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆44Updated 5 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- ☆59Updated last year
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆43Updated 3 months ago
- GLASS consortium☆42Updated 5 years ago
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆98Updated last year
- An R package to time somatic mutations☆65Updated 5 years ago
- ☆47Updated 5 years ago
- GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, miRNA and mRNA data in GDC☆68Updated 2 years ago
- ☆63Updated 5 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- Epimap processing and analysis code repository☆33Updated 3 years ago