zomithex / CIBERSORT
☆24Updated 9 years ago
Related projects ⓘ
Alternatives and complementary repositories for CIBERSORT
- Repository for Cibersortx☆51Updated 3 years ago
- ☆30Updated 2 years ago
- ☆46Updated last year
- ☆40Updated 6 years ago
- Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.☆23Updated 3 years ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆23Updated 3 years ago
- Multiscale embedded gene co-expression network analysis☆48Updated 10 months ago
- ☆74Updated 10 months ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 6 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 3 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆101Updated 3 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 3 years ago
- GLASS consortium☆37Updated 4 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆42Updated last year
- mutation(barcode) caller for 10x single cell data☆43Updated 4 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆43Updated 3 months ago
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".☆19Updated 5 years ago
- Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq☆46Updated 4 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆75Updated 2 years ago
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆47Updated 3 years ago
- ConsensusTME Gene Sets and R Script☆39Updated 5 months ago
- ☆29Updated 6 years ago
- Code related to the Celligner manuscript☆43Updated 4 years ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆75Updated last year
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆26Updated 10 months ago
- Scripts to recreate figures from the SC3 paper☆39Updated 7 years ago
- Bayesian network plot for the enrichment analysis results☆60Updated last month
- ☆48Updated 4 months ago
- Reference transcriptome indices build from kallisto for popular organisms☆41Updated 11 months ago