Alternatives and similar repositories for deconvolution-papers:

Users that are interested in deconvolution-papers are comparing it to the libraries listed below

• icbi-lab / immune_deconvolution_benchmark
  Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…
  ☆42Updated 4 years ago
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated 9 months ago
• shendurelab / single-cell-ko-screens
  Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…
  ☆26Updated 3 years ago
• faryabib / too-many-cells
  Cluster single cells and analyze cell clade relationships with colorful visualizations.
  ☆45Updated 3 years ago
• bioinfoDZ / RISC
  A R package for integrated scRNA-seq data analysis using the RPCI algorithm
  ☆44Updated 11 months ago
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆37Updated 2 years ago
• single-cell-genetics / cardelino
  Clone identification from single-cell data
  ☆61Updated 2 years ago
• elimereu / matchSCore2
  ☆53Updated 4 years ago
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆45Updated last year
• dbrg77 / plate_scATAC-seq
  A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method
  ☆43Updated 4 years ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆72Updated 4 years ago
• markrobinsonuzh / scRNAseq_clustering_comparison
  A study to compare methods for clustering of scRNA-seq data
  ☆42Updated 7 months ago
• jdekanter / CHETAH
  scRNA-seq cell type identification
  ☆44Updated 5 years ago
• edsgard / trendsceek
  Identify genes with spatial expression trends in single-cell gene expression data
  ☆50Updated 6 years ago
• lhe17 / nebula
  ☆35Updated last year
• dtsoucas / DWLS
  Gene expression deconvolution using dampened weighted least squares
  ☆25Updated 4 years ago
• dgrun / StemID
  Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.
  ☆42Updated 8 years ago
• shenorrLabTRDF / cellAlign
  ☆38Updated 4 years ago
• pachterlab / NYMP_2018
  ☆28Updated 6 years ago
• qianhuiSenn / scRNA_cell_deconv_benchmark
  Evaluation of Cell Type Annotation R Packages on Single Cell RNA-seq Data
  ☆29Updated last year
• caleblareau / gchromVAR
  Cell type specific enrichments using finemapped variants and quantitative epigenetic data
  ☆43Updated last year
• zhengtaoxiao / Single-Cell-Metabolic-Landscape
  Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data
  ☆22Updated 3 years ago
• dgrun / RaceID3_StemID2_package
  Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. This is a novel R package of the RaceID3 and S…
  ☆43Updated 3 months ago
• willtownes / scrna2019
  supporting code for the multinomial single cell RNA-Seq paper
  ☆51Updated 4 years ago
• ambrosejcarr / seqc
  Single-Cell Sequencing Quality Control and Processing Software
  ☆30Updated 5 years ago
• MarioniLab / scran
  Clone of the Bioconductor repository for the scran package.
  ☆41Updated 6 months ago
• satijalab / Integration2019
  ☆16Updated 5 years ago
• supatt-lab / SingCellaR
  an integrative analysis tool for analysing large-scale single cell RNA-sequencing data
  ☆33Updated last year
• rikenbit / scTensor
  R package for detection of cell-cell interaction using Non-negative Tensor Decomposition
  ☆34Updated 2 years ago
• nghiavtr / SCmut
  ☆31Updated 5 years ago