List of papers on deconvolution of cell types in bulk RNA-seq based on single-cell signatures
☆19Aug 28, 2020Updated 6 years ago
Alternatives and similar repositories for deconvolution-papers
Users that are interested in deconvolution-papers are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- scRNAseq integration with triplet neural networks☆41Feb 2, 2026Updated 8 months ago
- single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.☆21Jan 22, 2026Updated 9 months ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆45Jul 6, 2020Updated 6 years ago
- reorganize paper of deconvolution method☆11Dec 14, 2023Updated 2 years ago
- Gene expression deconvolution using dampened weighted least squares☆38Feb 4, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A computational framework for bulk RNA-seq deconvolution☆11Dec 3, 2024Updated last year
- A differential and enrichment analyses pipeline for bulk ATAC-seq (and RNA-seq)☆16Feb 9, 2026Updated 8 months ago
- Simulate pseudo-bulk RNAseq samples from scRNAseq expression data☆19Aug 3, 2026Updated 2 months ago
- HPC and queue usage class syllabus☆16Sep 28, 2021Updated 5 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆23Oct 9, 2020Updated 6 years ago
- ☆59Nov 21, 2020Updated 5 years ago
- Instructions and analysis scripts for single cell Higher Order Testing (scHOT)☆10Oct 7, 2020Updated 6 years ago
- ☆12Jan 27, 2022Updated 4 years ago
- Software for in silico evolution - Paul François' group McGill University☆10Mar 16, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Deep Learning based cell composition analysis with Scaden.☆92Nov 5, 2024Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆76Dec 2, 2020Updated 5 years ago
- Absolve antibody variable domain sequence analysis☆18Sep 13, 2018Updated 8 years ago
- analysis of single cell RNA sequencing data and cell type annotation☆19Jan 2, 2020Updated 6 years ago
- A suite of scientific workflows to assess metrics to compare efficacy of protein-based tumor deconvolution algorithms.☆16Jul 6, 2026Updated 3 months ago
- A comprehensive TypeScript starter pack for modern web development, designed to streamline your project setup with usefull practices.☆15Jun 27, 2025Updated last year
- functions and algorithms for single cell RNA-seq analyses☆11Jan 26, 2021Updated 5 years ago
- Processing workflow for COVID-19 single cell data☆17Dec 23, 2021Updated 4 years ago
- The Jackson Laboratory Data Science Nextflow based analysis workflows☆27Oct 1, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆26Aug 20, 2024Updated 2 years ago
- A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍☆77May 20, 2021Updated 5 years ago
- ☆11Jan 7, 2020Updated 6 years ago
- Reliable, scalable, efficient demultiplexing for single-cell RNA sequencing☆28Jul 20, 2025Updated last year
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆35Apr 4, 2025Updated last year
- Multi-omics studies are available here☆53Jul 3, 2022Updated 4 years ago
- Regulatory networks with Direct Information☆19Oct 14, 2019Updated 7 years ago
- This package removes unwanted variation from raw sequencing count data using Negative Binomial and/or Zero Inflated Negative Binomial mod…☆20Jun 13, 2024Updated 2 years ago
- R code to work with the NIH RePORTER API☆11Feb 11, 2026Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- List of computational resources for analyzing microbial sequencing data.☆66Nov 18, 2025Updated 11 months ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆42Feb 8, 2023Updated 3 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆20May 24, 2021Updated 5 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆59May 5, 2021Updated 5 years ago
- A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.☆35Jan 3, 2023Updated 3 years ago
- Tools for Adaptive Immune Receptor Sequence-Based Machine and Deep Learning☆15Aug 22, 2026Updated 2 months ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆23May 27, 2026Updated 5 months ago