lmweber / deconvolution-papers
List of papers on deconvolution of cell types in bulk RNA-seq based on single-cell signatures
☆18Updated 4 years ago
Related projects: ⓘ
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆21Updated last month
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆25Updated 2 years ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆23Updated 2 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆40Updated 7 months ago
- Clone identification from single-cell data☆57Updated last year
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- ConsensusTME Gene Sets and R Script☆38Updated 3 months ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆42Updated last year
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆26Updated 4 years ago
- SCDC☆42Updated last year
- analysis script for GBM single cell RNA seq data☆17Updated 3 years ago
- ☆33Updated 5 years ago
- ☆16Updated 5 years ago
- 10x single cell RNA-seq data from the developing mouse retina☆16Updated 3 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆21Updated 5 years ago
- scWGCNA☆53Updated last year
- ☆25Updated 3 years ago
- R package for specialised analysis of single cell data☆35Updated last year
- SIB/Scilifelab autumn school in single cell omics 2019.☆21Updated 4 years ago
- ☆36Updated 3 years ago
- Functions for single cell data analysis☆22Updated 3 years ago
- Single-cell Orientation Tracing☆21Updated 2 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆28Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆41Updated 3 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆24Updated last year
- ☆29Updated last year
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆14Updated 2 years ago
- Marker gene selection from scRNA-seq data☆15Updated 4 years ago
- R/Bioconductor package for working with 10x scATACseq data☆38Updated 10 months ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago