HantaoShu / DeepSEM
☆76Updated last year
Alternatives and similar repositories for DeepSEM:
Users that are interested in DeepSEM are comparing it to the libraries listed below
- Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.☆68Updated 3 months ago
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆41Updated last year
- ☆28Updated 2 years ago
- Single-cell biological network inference using a heterogeneous graph transformer☆72Updated last month
- ☆38Updated 2 years ago
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆38Updated 2 years ago
- SIMBA: SIngle-cell eMBedding Along with features☆58Updated 6 months ago
- Additional code and analysis from the single-cell integration benchmarking project☆60Updated 2 years ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆49Updated 3 years ago
- ☆29Updated 2 years ago
- ☆19Updated 6 months ago
- spatial transcriptome, single cell☆67Updated 2 years ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆30Updated last year
- ☆47Updated last year
- Single-Cell (Perturbation) Model Library☆50Updated 3 weeks ago
- ☆24Updated 4 years ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆99Updated 8 months ago
- CLEAR: Self-supervised contrastive learning for integrative single-cell RNA-seq data analysis☆33Updated 2 years ago
- Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space☆76Updated 3 weeks ago
- Models and datasets for perturbational single-cell omics☆153Updated 2 years ago
- ☆17Updated 3 years ago
- scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction☆19Updated 6 months ago
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆32Updated 2 months ago
- ☆45Updated 2 years ago
- ☆58Updated 7 months ago
- ☆36Updated 8 months ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆89Updated 3 weeks ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆63Updated 10 months ago
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆93Updated last month
- A simulator for single-cell expression data guided by gene regulatory networks☆60Updated 11 months ago