Alternatives and similar repositories for DeepSEM:

Users that are interested in DeepSEM are comparing it to the libraries listed below

• zpliulab / GENELink
  ☆26Updated 2 years ago
• zhanglab-wbgcas / STGRNS
  ☆29Updated last year
• melobio / Concerto-reproducibility
  ☆37Updated 2 years ago
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆57Updated 2 years ago
• wukevin / babel
  Deep learning model for single-cell inference of multi-omic profiles from a single input modality.
  ☆39Updated last year
• OSU-BMBL / deepmaps
  Single-cell biological network inference using a heterogeneous graph transformer
  ☆70Updated last year
• HelloWorldLTY / scEval
  Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.
  ☆62Updated last month
• yhr91 / GEARS_misc
  ☆17Updated 4 months ago
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆148Updated 2 years ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆67Updated last year
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆49Updated 3 years ago
• sunyolo / DeepTFni
  A VGAE-based model to infer transcription factor regulatory network
  ☆24Updated 2 years ago
• xianglin226 / Benchmarking-Single-Cell-Perturbation
  Single-Cell (Perturbation) Model Library
  ☆35Updated last month
• zcang / SpaOTsc
  ☆45Updated 2 years ago
• rsinghlab / scNODE
  scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction
  ☆18Updated 4 months ago
• YangLabHKUST / SpatialScope
  A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
  ☆59Updated 8 months ago
• jsxlei / SCALEX
  Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space
  ☆74Updated 2 months ago
• labomics / midas
  ☆51Updated last week
• cole-trapnell-lab / sci-plex
  repository containing analysis scripts and auxiliary files
  ☆33Updated 4 years ago
• pinellolab / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆58Updated 4 months ago
• welch-lab / PerturbNet
  PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
  ☆29Updated 2 weeks ago
• theislab / scgen-reproducibility
  ☆24Updated 4 years ago
• xiaoyeye / CCST
  Cell clustering for spatial transcriptomics data with graph neural network
  ☆59Updated last year
• drieslab / spatial-datasets
  overview of spatial datasets
  ☆70Updated last year
• bm2-lab / scMVP
  ☆29Updated this week
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆66Updated last year
• theislab / prophet
  ☆28Updated last month
• Su-informatics-lab / DSTG
  Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
  ☆37Updated 2 years ago
• Roy-lab / scMTNI
  ☆23Updated last month
• bowang-lab / DeepVelo
  ☆47Updated last year