☆90Jun 24, 2023Updated 2 years ago
Alternatives and similar repositories for DeepSEM
Users that are interested in DeepSEM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆36Sep 2, 2022Updated 3 years ago
- BEELINE: evaluation of algorithms for gene regulatory network inference☆210May 25, 2026Updated 2 weeks ago
- ☆30Apr 11, 2023Updated 3 years ago
- CeSpGRN: Inferring cell specific GRN using single-cell gene expression data☆22Mar 23, 2026Updated 2 months ago
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆56Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- SINCERITIES is a tool for inferring gene regulatory networks from time-stamped cross-sectional single cell transcriptional expression pro…☆15Oct 16, 2017Updated 8 years ago
- Methods for inferring undirected networks from data☆47Mar 17, 2021Updated 5 years ago
- This is the alpha version of the CellOracle package☆462Apr 30, 2026Updated last month
- A deep model infers gene regulation networks from scRNA-seq data.☆12Aug 1, 2024Updated last year
- Deep Learning based cell composition analysis with Scaden.☆91Nov 5, 2024Updated last year
- nimfa - A Python Library for Nonnegative Matrix Factorization Techniques☆10Aug 30, 2018Updated 7 years ago
- Analysis of snRNA-seq2 data coming from 3 months old mouse liver, dissecting the influence ploidy has on gene expression.☆14Dec 6, 2021Updated 4 years ago
- A VGAE-based model to infer transcription factor regulatory network☆29Jul 25, 2022Updated 3 years ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆15Nov 9, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆15Jul 9, 2025Updated 11 months ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆41Mar 31, 2026Updated 2 months ago
- covolutional neural network based coexpression analysis☆79Jun 13, 2020Updated 6 years ago
- ☆25Aug 15, 2023Updated 2 years ago
- epigenome analysis to rank transcription factors☆15Dec 19, 2019Updated 6 years ago
- A deep learning architecture for robust inference and accurate prediction of cellular dynamics☆82Jul 20, 2025Updated 10 months ago
- Multi-omic velocity inference☆118Oct 23, 2024Updated last year
- ☆27Sep 2, 2021Updated 4 years ago
- A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data☆38Mar 26, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆41Sep 5, 2021Updated 4 years ago
- Discovering novel cell types across heterogenous single-cell experiments☆124Dec 8, 2022Updated 3 years ago
- ☆32May 19, 2019Updated 7 years ago
- ☆48Apr 18, 2020Updated 6 years ago
- Single-cell biological network inference using a heterogeneous graph transformer☆77Feb 24, 2025Updated last year
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆155Nov 10, 2023Updated 2 years ago
- ☆14Feb 24, 2020Updated 6 years ago
- DANCE: a deep learning library and benchmark platform for single-cell analysis☆390Apr 27, 2026Updated last month
- Information-based dimensionality reduction☆30Dec 14, 2024Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- benchmark for single-cell RNA-seq imputation methods☆30Mar 16, 2024Updated 2 years ago
- Models and datasets for perturbational single-cell omics☆178Aug 19, 2022Updated 3 years ago
- ☆34Jun 1, 2022Updated 4 years ago
- Deep learning for modeling gene regulatory network☆23Sep 5, 2021Updated 4 years ago
- ☆14Aug 13, 2023Updated 2 years ago
- ☆129Updated this week
- Marker Selection by matching manifolds and elastic net☆23Oct 22, 2024Updated last year