HantaoShu / DeepSEM
☆72Updated last year
Related projects ⓘ
Alternatives and complementary repositories for DeepSEM
- ☆26Updated 2 years ago
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆39Updated last year
- ☆28Updated last year
- Additional code and analysis from the single-cell integration benchmarking project☆55Updated last year
- Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space☆72Updated last week
- scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction☆17Updated last month
- Models and datasets for perturbational single-cell omics☆143Updated 2 years ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆48Updated 2 years ago
- Single-cell biological network inference using a heterogeneous graph transformer☆67Updated last year
- ☆16Updated 3 years ago
- Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.☆51Updated 2 months ago
- ☆44Updated last year
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆109Updated 2 months ago
- A VGAE-based model to infer transcription factor regulatory network☆24Updated 2 years ago
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆29Updated this week
- ☆21Updated 4 years ago
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆34Updated 2 years ago
- ☆36Updated last year
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆53Updated 5 months ago
- Predict RNA velocity through deep learning☆64Updated 11 months ago
- SIMBA: SIngle-cell eMBedding Along with features☆55Updated last month
- ☆15Updated last month
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…☆46Updated last year
- ☆28Updated 2 months ago
- Cell clustering for spatial transcriptomics data with graph neural network☆58Updated last year
- Diffusion model for gene regulatory network inference.☆15Updated 5 months ago
- ☆48Updated 5 years ago
- ☆79Updated last week
- ☆27Updated 3 weeks ago
- ☆32Updated 9 months ago