HantaoShu / DeepSEMLinks
☆90Updated 2 years ago
Alternatives and similar repositories for DeepSEM
Users that are interested in DeepSEM are comparing it to the libraries listed below
Sorting:
- Single-cell biological network inference using a heterogeneous graph transformer☆76Updated 11 months ago
- ☆30Updated 2 years ago
- ☆35Updated 3 years ago
- Models and datasets for perturbational single-cell omics☆172Updated 3 years ago
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆61Updated 3 weeks ago
- Single-Cell (Perturbation) Model Library☆89Updated 2 weeks ago
- ☆33Updated 5 years ago
- Single-cell perturbation effects prediction benchmark☆58Updated 3 weeks ago
- Additional code and analysis from the single-cell integration benchmarking project☆71Updated 3 years ago
- A VGAE-based model to infer transcription factor regulatory network☆28Updated 3 years ago
- ☆69Updated 6 months ago
- BEELINE: evaluation of algorithms for gene regulatory network inference☆204Updated 2 months ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆134Updated last year
- Transformer for One-Stop Interpretable Cell-type Annotation☆146Updated last year
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆46Updated 2 years ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆52Updated 4 years ago
- ☆74Updated last week
- SIMBA: SIngle-cell eMBedding Along with features☆66Updated last year
- Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network☆106Updated 2 years ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆77Updated last year
- Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space☆81Updated 3 weeks ago
- ☆90Updated last year
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆113Updated 4 months ago
- Discovering novel cell types across heterogenous single-cell experiments☆123Updated 3 years ago
- ☆51Updated 10 months ago
- ☆40Updated 3 years ago
- PyTorch implementation of the MIDAS algorithm for single-cell multimodal data integration (Nature Biotechnology 2024).☆62Updated 2 months ago
- ☆52Updated 3 weeks ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆164Updated 11 months ago
- ☆59Updated last week