CahanLab / PySingleCellNetLinks
singleCellNet in Python
☆15Updated 3 weeks ago
Alternatives and similar repositories for PySingleCellNet
Users that are interested in PySingleCellNet are comparing it to the libraries listed below
Sorting:
- A toolking for cell type hierarchies: marker selection & consistent classification☆22Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆22Updated last year
- ☆12Updated 4 years ago
- Regulatory networks with Direct Information☆16Updated 5 years ago
- TCR Reconstruction Algorithm for Paired-End Single cell☆14Updated 5 years ago
- TF analysis from epigenetic and Hi-C data☆18Updated 6 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 7 months ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- Tools for analyzing Slide-seq data☆31Updated last year
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated 11 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- Code for scKINETICS (ISMB 2023)☆22Updated last year
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆51Updated last year
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Updated last week
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆30Updated this week
- A python package for chromVAR☆30Updated 2 years ago
- Toolkit for single-cell copy number analysis☆24Updated 3 months ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year
- ☆37Updated 7 months ago
- Data processing and analysis scripts for our spatial profiling of embryos using seqFISH☆16Updated 2 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 6 years ago
- Vaeda method for computational doublet annotation☆17Updated last year
- represent each cell in UMAP plots as a pie chart☆16Updated 4 years ago
- ☆15Updated 2 years ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆22Updated last year
- A single-cell and spatial RNA-seq database for Alzheimer’s Disease☆26Updated last year
- Supporting material for publication: "Ovarian cancer mutational processes drive site-specific immune evasion"☆23Updated 5 months ago
- ☆12Updated 4 years ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated 2 weeks ago