Alternatives and similar repositories for granulator

Users that are interested in granulator are comparing it to the libraries listed below

• adoostparast / CellR
  CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq
  ☆18Updated 4 years ago
• mainciburu / WAT3R
  Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)
  ☆21Updated 2 years ago
• single-cell-genetics / XClone
  Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.
  ☆37Updated last month
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated 10 months ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆43Updated 2 weeks ago
• PoolLab / generecovery
  ☆29Updated 2 years ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆22Updated last year
• kharchenkolab / cacoa
  Single-cell Case Control Analysis
  ☆52Updated this week
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆40Updated 3 years ago
• greenelab / miQC
  Flexible, probablistic metrics for quality control of scRNA-seq data
  ☆21Updated 2 years ago
• shenorrLabTRDF / cellAlign
  ☆42Updated 4 years ago
• neurorestore / DE-analysis
  ☆39Updated 4 years ago
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆37Updated 2 years ago
• JEFworks-Lab / CRAWDAD
  Cell-type Relationship Analysis Workflow Done Across Distances
  ☆36Updated 2 months ago
• aet21 / EpiSCORE
  Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
  ☆33Updated 4 months ago
• MSingerLab / COMETSC
  COMET Single-Cell Marker Detection tool
  ☆31Updated 3 years ago
• ambrosejcarr / seqc
  Single-Cell Sequencing Quality Control and Processing Software
  ☆30Updated 5 years ago
• jyyulab / scMINER
  Single-cell Mutual Information-based Network Engineering Ranger
  ☆20Updated this week
• Simon-Leonard / FlexDotPlot
  R package for Flexible dot plots
  ☆29Updated 3 years ago
• CyrilLagger / scDiffCom
  Difference in Intercellular Communication from scRNA-seq data
  ☆22Updated last year
• satijalab / azimuth-references
  ☆24Updated 3 months ago
• satijalab / Mixscale
  ☆19Updated 4 months ago
• cbib / Seurat-Integrate
  R package gathering a set of wrappers to apply various integration methods to Seurat objects (and rate such methods)
  ☆32Updated 3 months ago
• linnarsson-lab / cytograph
  Algorithms for single-cell analysis
  ☆29Updated 4 years ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 5 months ago
• RMolania / TCGA_PanCancer_UnwantedVariation
  ☆47Updated last year
• Teichlab / sctk
  ☆40Updated 2 weeks ago
• BimberLab / cellhashR
  An R package designed to demultiplex cell hashing data
  ☆31Updated 3 weeks ago
• GabrielHoffman / dreamlet
  Perform differential expression analysis on multi-sample single cell datasets using linear mixed models
  ☆25Updated 4 months ago
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆31Updated last year