Alternatives and similar repositories for trajectorama

Users that are interested in trajectorama are comparing it to the libraries listed below

• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆40Updated 6 years ago
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated 2 years ago
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆41Updated 2 years ago
• klarman-cell-observatory / scPlot
  Single cell interactive plotting tools
  ☆23Updated 5 years ago
• lcmmichielsen / scHPL
  ☆35Updated 4 months ago
• KChen-lab / SCMER
  Marker Selection by matching manifolds and elastic net
  ☆23Updated 8 months ago
• cellatlas / human
  ☆44Updated 8 months ago
• mainciburu / WAT3R
  Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)
  ☆21Updated 2 years ago
• satijalab / scChromHMM
  🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…
  ☆28Updated 3 years ago
• vals / Blog
  ☆37Updated last week
• jingshuw / SAVERX
  R package for transfer learning of single-cell RNA-seq denoising
  ☆30Updated 3 years ago
• GreenleafLab / motifmatchr
  Fast motif matching in R
  ☆47Updated last year
• markrobinsonuzh / scRNAseq_clustering_comparison
  A study to compare methods for clustering of scRNA-seq data
  ☆43Updated 11 months ago
• liulab-dfci / lisa
  epigenome analysis to rank transcription factors
  ☆13Updated 5 years ago
• cole-trapnell-lab / Scribe
  Regulatory networks with Direct Information
  ☆16Updated 5 years ago
• quon-titative-biology / scAlign
  A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…
  ☆38Updated 3 years ago
• rs239 / velorama
  Gene regulatory network inference for RNA velocity and pseudotime data
  ☆27Updated 3 months ago
• pachterlab / GFCP_2022
  RNA velocity validation
  ☆22Updated 3 years ago
• Winnie09 / imputationBenchmark
  benchmark for single-cell RNA-seq imputation methods
  ☆26Updated last year
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆37Updated 2 years ago
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆42Updated 2 years ago
• SydneyBioX / CiteFuse
  CiteFuse:
  ☆28Updated 2 years ago
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆87Updated 8 months ago
• pinellolab / pychromVAR
  A python package for chromVAR
  ☆28Updated 2 years ago
• CostaLab / scopen
  scOpen: single-cell open chromatin analysis via NMF modelling
  ☆26Updated 2 years ago
• DeplanckeLab / ChromatinHD
  High-definition modeling of chromatin + transcriptomics data
  ☆24Updated 2 months ago
• aertslab / ScoMAP
  ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.
  ☆27Updated 3 years ago
• theislab / mubind
  Learning motif contributions to cell transitions using sequence features and graphs.
  ☆28Updated 10 months ago
• linnarsson-lab / cytograph
  Algorithms for single-cell analysis
  ☆29Updated 3 years ago
• Teichlab / MultiMAP
  MultiMAP for integration of single cell multi-omics
  ☆56Updated last year