User-friendly bulk RNAseq deconvolution using simulated annealing
☆18Feb 8, 2024Updated 2 years ago
Alternatives and similar repositories for cellanneal
Users that are interested in cellanneal are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- digitalDLSorteR: An R package to deconvolute bulk RNA-Seq using scRNA-Seq data☆15Oct 31, 2024Updated last year
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- Approximate Bayesian Computation (ABC) with differential evolution (de) moves and model evidence (Z) estimates.☆17Mar 13, 2026Updated 2 weeks ago
- ☆14Nov 27, 2025Updated 4 months ago
- Global nonlinear optimization with automatic differentiation☆15Sep 11, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data☆29Apr 3, 2024Updated last year
- ☆13Jan 6, 2021Updated 5 years ago
- Code for the Manifold Boundary Approximation Method☆16Oct 10, 2022Updated 3 years ago
- ☆15Sep 27, 2022Updated 3 years ago
- A suite of scientific workflows to assess metrics to compare efficacy of protein-based tumor deconvolution algorithms.☆16Jan 15, 2024Updated 2 years ago
- ☆16Jun 17, 2021Updated 4 years ago
- MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance i…☆43Feb 20, 2025Updated last year
- The R code compares the performance metrics between logistic regression, SVM, Naive Bayes, Knn and random forest classifers in a 10 fold …☆15Mar 13, 2016Updated 10 years ago
- Multi-Worm Behaviour Tracker. README here:☆35Mar 4, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Hyperdimensional computing in Julia☆17Mar 20, 2026Updated last week
- Count and compare 16S rRNA genes within a genus☆16Aug 1, 2024Updated last year
- A Biological Oscillations Analysis Toolkit☆21Feb 16, 2026Updated last month
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57Mar 16, 2026Updated last week
- Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"☆17Jul 9, 2023Updated 2 years ago
- Deep Learning based cell composition analysis with Scaden.☆88Nov 5, 2024Updated last year
- a simple R data package for curated cancer pathway-specific gene lists☆13Mar 31, 2020Updated 5 years ago
- An integrated database for improving taxonomic classification of 16S Ribosomal RNA sequences.☆19May 30, 2023Updated 2 years ago
- Python playground for cell-type-specific biology☆12Jan 20, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆13Feb 13, 2026Updated last month
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆19May 24, 2021Updated 4 years ago
- Created a RNN with LSTM cells to learn patterns from SMILES Strings, and use them to generate new molecular structures.☆18Mar 18, 2019Updated 7 years ago
- Code that powers Solid Service API on Cloudflare Workers.☆15Nov 19, 2022Updated 3 years ago
- 🔬 R package: Analysis of Large Affymetrix Microarray Data Sets☆12Dec 14, 2025Updated 3 months ago
- Python GUI for differential forms☆13Oct 14, 2023Updated 2 years ago
- Highly accurate cell type proportion estimation with in silico data augmentation and deep neural networks☆18Jun 2, 2022Updated 3 years ago
- A permutation-free framework for scalable, robust, and reference-based cell-cell communication analysis in single cell transcriptomics st…☆22Mar 17, 2026Updated last week
- Neural network from scratch in Python using Numpy☆12May 28, 2017Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- classifying human DNA sequence and random ATCG sequences, using keras CNN☆23Jul 8, 2017Updated 8 years ago
- ☆13Jan 2, 2024Updated 2 years ago
- Analysis of (gut) microbiome in Qiime2 and R.☆23Aug 23, 2024Updated last year
- COMET Single-Cell Marker Detection tool☆32Jun 21, 2022Updated 3 years ago
- Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits☆11Jun 2, 2021Updated 4 years ago
- CAISC (Clonal Architecture with Integrating SNV and CNV): a software to integrate copy number variation and single nucleotide mutations f…☆13Jul 19, 2021Updated 4 years ago
- This project consists of three parts: Random forest model for GC diagnosis and Predict the survival outcomes of GC patient using RSF meth…☆31Nov 15, 2024Updated last year