User-friendly bulk RNAseq deconvolution using simulated annealing
☆18Feb 8, 2024Updated 2 years ago
Alternatives and similar repositories for cellanneal
Users that are interested in cellanneal are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- digitalDLSorteR: An R package to deconvolute bulk RNA-Seq using scRNA-Seq data☆16Oct 31, 2024Updated last year
- ☆14Nov 27, 2025Updated 10 months ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data☆29Apr 3, 2024Updated 2 years ago
- Global nonlinear optimization with automatic differentiation☆15Sep 4, 2026Updated 3 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆13Jan 6, 2021Updated 5 years ago
- Code for the Manifold Boundary Approximation Method☆16Oct 10, 2022Updated 3 years ago
- ☆15Sep 27, 2022Updated 4 years ago
- A suite of scientific workflows to assess metrics to compare efficacy of protein-based tumor deconvolution algorithms.☆16Jul 6, 2026Updated 2 months ago
- MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance i…☆46Feb 20, 2025Updated last year
- Count and compare 16S rRNA genes within a genus☆17Aug 1, 2024Updated 2 years ago
- The R code compares the performance metrics between logistic regression, SVM, Naive Bayes, Knn and random forest classifers in a 10 fold …☆15Mar 13, 2016Updated 10 years ago
- ☆17Jun 17, 2021Updated 5 years ago
- Hyperdimensional computing in Julia☆20Sep 17, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A Biological Oscillations Analysis Toolkit☆21Sep 12, 2026Updated 2 weeks ago
- Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"☆17Jul 9, 2023Updated 3 years ago
- An integrated database for improving taxonomic classification of 16S Ribosomal RNA sequences.☆19May 30, 2023Updated 3 years ago
- Analysis of (gut) microbiome in Qiime2 and R.☆25Aug 23, 2024Updated 2 years ago
- Highly accurate cell type proportion estimation with in silico data augmentation and deep neural networks☆18Jun 2, 2022Updated 4 years ago
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57Jun 29, 2026Updated 2 months ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆20May 24, 2021Updated 5 years ago
- ☆10Sep 2, 2024Updated 2 years ago
- classifying human DNA sequence and random ATCG sequences, using keras CNN☆23Jul 8, 2017Updated 9 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆14Jan 2, 2024Updated 2 years ago
- Deep Learning based cell composition analysis with Scaden.☆92Nov 5, 2024Updated last year
- Created a RNN with LSTM cells to learn patterns from SMILES Strings, and use them to generate new molecular structures.☆18Mar 18, 2019Updated 7 years ago
- PCaDB - a comprehensive and interactive database for transcriptomes from prostate cancer population cohorts☆10Dec 29, 2021Updated 4 years ago
- Neural network from scratch in Python using Numpy☆12May 28, 2017Updated 9 years ago
- a simple R data package for curated cancer pathway-specific gene lists☆13Mar 31, 2020Updated 6 years ago
- COMET Single-Cell Marker Detection tool☆33Jun 21, 2022Updated 4 years ago
- Python GUI for differential forms☆13Oct 14, 2023Updated 2 years ago
- Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits☆11Jun 2, 2021Updated 5 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- 🔬 R package: Analysis of Large Affymetrix Microarray Data Sets☆12Dec 14, 2025Updated 9 months ago
- Python playground for cell-type-specific biology☆14Aug 25, 2026Updated last month
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆14Feb 13, 2026Updated 7 months ago
- ☆10Jul 22, 2020Updated 6 years ago
- Learning Kinetic Models from Time Series Proteomics and Metabolomics Data☆32Jun 21, 2022Updated 4 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆36Feb 28, 2022Updated 4 years ago
- ☆14Sep 18, 2026Updated last week