neurorestore / DE-analysis
☆37Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for DE-analysis
- ☆27Updated 3 months ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆43Updated 8 months ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆40Updated 2 years ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆25Updated last month
- ☆48Updated 4 months ago
- ☆29Updated last year
- scWGCNA☆55Updated 2 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 3 weeks ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆68Updated 2 months ago
- ☆39Updated 3 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆42Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆63Updated 6 months ago
- ☆53Updated 3 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆36Updated 2 weeks ago
- Functions for single cell data analysis☆27Updated 3 years ago
- Single cell RNA-seq analysis bundle☆33Updated 5 years ago
- Using TCR and expression for sequence embedding☆48Updated 2 weeks ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆25Updated last month
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆26Updated 4 months ago
- scGSVA: Perform GSVA for single cell RNA seq☆48Updated last week
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- ConsensusTME Gene Sets and R Script☆39Updated 5 months ago
- ☆42Updated 4 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆21Updated 5 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆33Updated 3 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆24Updated last month
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆41Updated 9 months ago
- A tool for removing doublets from single-cell RNA-seq data☆69Updated 3 years ago
- mutation(barcode) caller for 10x single cell data☆43Updated 4 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆31Updated 3 years ago