☆39Aug 4, 2021Updated 4 years ago
Alternatives and similar repositories for DE-analysis
Users that are interested in DE-analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆185May 4, 2026Updated 2 months ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆21Mar 16, 2022Updated 4 years ago
- ☆16May 25, 2021Updated 5 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆34Nov 28, 2025Updated 7 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Supplementary files and notebooks to recreate figures.☆21Jun 15, 2026Updated last month
- analysis script for GBM single cell RNA seq data☆22May 26, 2021Updated 5 years ago
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆15Jan 16, 2024Updated 2 years ago
- GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.☆14Jun 13, 2023Updated 3 years ago
- ☆23Jan 6, 2026Updated 6 months ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆36Jan 8, 2025Updated last year
- ☆22Feb 20, 2022Updated 4 years ago
- This package removes unwanted variation from raw sequencing count data using Negative Binomial and/or Zero Inflated Negative Binomial mod…☆18Jun 13, 2024Updated 2 years ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Dec 5, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆17Jun 17, 2021Updated 5 years ago
- popsicleR, a flexible R package aimed at providing most of the necessary quality controls and preliminary information for complete and de…☆25Dec 3, 2025Updated 7 months ago
- COMUNET: a tool to explore and visualize intercellular communication☆13Apr 15, 2020Updated 6 years ago
- Reproducibility repository for the Human Neural Organoid Atlas publication☆51Dec 16, 2024Updated last year
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆15Nov 9, 2023Updated 2 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆37Updated this week
- ☆12Nov 7, 2022Updated 3 years ago
- Reconstruct the lineage topology of a scRNA-seq differentiation dataset.☆19Jun 25, 2020Updated 6 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆27Oct 17, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Feb 19, 2026Updated 5 months ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Jul 1, 2020Updated 6 years ago
- Clone of the Bioconductor repository for the batchelor package.☆20Apr 9, 2026Updated 3 months ago
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Mar 4, 2025Updated last year
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆92Jul 16, 2026Updated last week
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆24Apr 10, 2025Updated last year
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆56Jan 20, 2025Updated last year
- ☆73Apr 17, 2024Updated 2 years ago
- ☆55Aug 1, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆16Sep 8, 2024Updated last year
- ☆10Oct 15, 2025Updated 9 months ago
- ☆40Jun 24, 2025Updated last year
- The R/Python scripts for the analysis of single-cell RNA-seq data from COVID-19 patients☆10Dec 16, 2020Updated 5 years ago
- Metric learning-based graph-partitioned trajectory inference from single-cell data☆12Apr 28, 2023Updated 3 years ago
- ☆29Sep 4, 2023Updated 2 years ago
- ☆26Aug 24, 2023Updated 2 years ago