neurorestore / DE-analysisLinks
☆39Updated 4 years ago
Alternatives and similar repositories for DE-analysis
Users that are interested in DE-analysis are comparing it to the libraries listed below
Sorting:
- scWGCNA☆61Updated 3 years ago
- Single-cell Case Control Analysis☆52Updated last week
- ☆32Updated 10 months ago
- ☆29Updated 2 years ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Updated 3 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 3 months ago
- ☆52Updated last year
- Functional Inference of Gene Regulation☆49Updated last year
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated last year
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- ☆47Updated 5 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 5 months ago
- ☆44Updated last week
- ☆47Updated 10 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆79Updated 7 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆91Updated 6 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated 3 months ago
- ☆50Updated 5 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 4 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- The scripts used for analyzing JAX mouse dataset☆26Updated last year
- cell type deconvolution for multi-condition bulk RNA-seq data☆29Updated 3 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆31Updated 2 years ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago