☆39Aug 4, 2021Updated 4 years ago
Alternatives and similar repositories for DE-analysis
Users that are interested in DE-analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆183May 6, 2025Updated 10 months ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆21Mar 16, 2022Updated 4 years ago
- Reproducibility repository for the Human Neural Organoid Atlas publication☆43Dec 16, 2024Updated last year
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆33Nov 28, 2025Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆16May 25, 2021Updated 4 years ago
- ☆22Jan 6, 2026Updated 2 months ago
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆15Jan 16, 2024Updated 2 years ago
- GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.☆14Jun 13, 2023Updated 2 years ago
- analysis script for GBM single cell RNA seq data☆22May 26, 2021Updated 4 years ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆36Jan 8, 2025Updated last year
- ☆16Jun 17, 2021Updated 4 years ago
- RiboNN: predicting translation efficiencies from mRNA sequences☆54Jan 12, 2026Updated 2 months ago
- ☆21Feb 20, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- popsicleR, a flexible R package aimed at providing most of the necessary quality controls and preliminary information for complete and de…☆24Dec 3, 2025Updated 3 months ago
- This package removes unwanted variation from raw sequencing count data using Negative Binomial and/or Zero Inflated Negative Binomial mod…☆18Jun 13, 2024Updated last year
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Dec 5, 2023Updated 2 years ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆14Nov 9, 2023Updated 2 years ago
- COMUNET: a tool to explore and visualize intercellular communication☆12Apr 15, 2020Updated 5 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11May 25, 2023Updated 2 years ago
- ☆12Nov 7, 2022Updated 3 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆36Aug 7, 2023Updated 2 years ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆20Apr 10, 2025Updated 11 months ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Feb 19, 2026Updated last month
- Clone of the Bioconductor repository for the batchelor package.☆18Mar 13, 2025Updated last year
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Jul 1, 2020Updated 5 years ago
- ☆13Feb 12, 2026Updated last month
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆52Jan 20, 2025Updated last year
- Reconstruct the lineage topology of a scRNA-seq differentiation dataset.☆19Jun 25, 2020Updated 5 years ago
- ☆72Apr 17, 2024Updated last year
- ☆55Aug 1, 2024Updated last year
- ☆16Sep 8, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Coarse-graining of large single-cell RNA-seq data into metacells☆98Feb 23, 2026Updated last month
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Jan 15, 2024Updated 2 years ago
- ☆10Oct 15, 2025Updated 5 months ago
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Mar 4, 2025Updated last year
- ☆38Oct 24, 2025Updated 5 months ago
- ☆41Jun 24, 2025Updated 9 months ago
- Metric learning-based graph-partitioned trajectory inference from single-cell data☆11Apr 28, 2023Updated 2 years ago