Alternatives and similar repositories for TED:

Users that are interested in TED are comparing it to the libraries listed below

• McGranahanLab / TcellExTRECT
  ☆47Updated last month
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆40Updated this week
• cellgeni / batchbench
  ☆46Updated 2 years ago
• omnideconv / omnideconv
  Unified access to several second-generation deconvolution methods
  ☆65Updated this week
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆72Updated 5 months ago
• morris-lab / Capybara
  Capybara: A computational tool to measure cell identity and fate transitions
  ☆57Updated 2 years ago
• RMolania / TCGA_PanCancer_UnwantedVariation
  ☆47Updated last year
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆70Updated 9 months ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆56Updated 2 years ago
• karthikj89 / scgenetics
  identifying disease critical cell types and programs from single cell RNAseq
  ☆52Updated 2 years ago
• MarioniLab / miloDE
  Framework for sensitive DE testing (using neighbourhoods)
  ☆64Updated 7 months ago
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated 8 months ago
• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆44Updated 4 years ago
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆44Updated last year
• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆90Updated 2 months ago
• shenorrLabTRDF / cellAlign
  ☆38Updated 4 years ago
• Single-Cell-Genomics-Group-CNAG-CRG / Tumor-Immune-Cell-Atlas
  Code repository for the Tumor Immune Cell Atlas (TICA) project
  ☆62Updated 2 years ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆71Updated 4 years ago
• cole-trapnell-lab / cicero-release
  ☆57Updated 5 months ago
• jcao89757 / SCINA
  SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples
  ☆64Updated 3 years ago
• niaid / dsb
  Normalize CITEseq Data
  ☆65Updated 8 months ago
• lhe17 / nebula
  ☆35Updated 11 months ago
• abelson-lab / scATOMIC
  Pan-Cancer Single Cell Classifier
  ☆64Updated 8 months ago
• bvieth / scRNA-seq-pipelines
  Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"
  ☆53Updated 4 years ago
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆55Updated last year
• elimereu / matchSCore2
  ☆53Updated 4 years ago
• KChen-lab / METAFlux
  ☆57Updated 7 months ago
• crazyhottommy / scATACutils
  R/Bioconductor package for working with 10x scATACseq data
  ☆38Updated last year
• Neurosurgery-Brain-Tumor-Center-DiazLab / CONICS
  CONICS: COpy-Number analysis In single-Cell RNA-Sequencing
  ☆74Updated last year
• faryabib / too-many-cells
  Cluster single cells and analyze cell clade relationships with colorful visualizations.
  ☆45Updated 3 years ago