a fully Bayesian approach to deconvolve tumor microenvironment
☆61Jun 20, 2022Updated 4 years ago
Alternatives and similar repositories for TED
Users that are interested in TED are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Jul 1, 2025Updated last year
- The blog of tidyomics☆13Jul 12, 2025Updated last year
- A fast and accurate deconvolution algorithm based on regularized matrix completion algorithm (ENIGMA)☆28Jun 21, 2023Updated 3 years ago
- A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression☆251Apr 3, 2026Updated 6 months ago
- ☆15Dec 9, 2019Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- R package for Protein activity analysis of single-cell RNAseq.☆90Sep 26, 2026Updated 2 weeks ago
- Some tools for plotting single-cell data☆178May 17, 2025Updated last year
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆18Apr 4, 2022Updated 4 years ago
- ☆14Oct 4, 2022Updated 4 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆22Jan 15, 2023Updated 3 years ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆43Dec 1, 2025Updated 10 months ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- SingleCell: A Python/Cython Package for Processing Single-Cell RNA-Seq Data.☆11Jan 26, 2018Updated 8 years ago
- TF analysis from epigenetic and Hi-C data☆19Apr 1, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Analysis for "K27M in canonical and noncanonical H3 variants occurs in distinct oligodendroglial cell lineages in brain midline gliomas" …☆11Oct 17, 2024Updated last year
- Scissor package☆277May 10, 2024Updated 2 years ago
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆11Sep 20, 2022Updated 4 years ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆46Oct 10, 2025Updated last year
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆250May 11, 2026Updated 5 months ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆46Jul 23, 2021Updated 5 years ago
- A Grammar of Data Manipulation for Omics Data☆21Aug 31, 2020Updated 6 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Jan 30, 2026Updated 8 months ago
- Multi-subject Single Cell Deconvolution☆315Mar 4, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- SCASA: Single cell transcript quantification tool☆23Nov 24, 2023Updated 2 years ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆48May 3, 2023Updated 3 years ago
- ☆12May 30, 2023Updated 3 years ago
- Dynamical systems methods for RNA velocity analysis☆24May 19, 2021Updated 5 years ago
- Deep Learning based cell composition analysis with Scaden.☆92Nov 5, 2024Updated last year
- cell type deconvolution for multi-condition bulk RNA-seq data☆37Feb 28, 2022Updated 4 years ago
- Multi-sample multi-group scRNA-seq analysis tools☆246Jul 6, 2026Updated 3 months ago
- Non-negative Independent Factor Analysis for single cell RNA-seq☆12Feb 25, 2022Updated 4 years ago
- Analysis of cell-cell communication at single-cell resolution☆108Sep 10, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Mar 25, 2024Updated 2 years ago
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆25May 14, 2023Updated 3 years ago
- Reproducing the experiments of the DestVI paper☆24Feb 9, 2022Updated 4 years ago
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing data☆216Dec 10, 2025Updated 10 months ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Nov 13, 2023Updated 2 years ago
- cancereffectsizeR: An R package for calculation of somatic mutation rates and quantification of selection in cancer☆20Oct 2, 2026Updated last week
- An interpretable deep learning model for cancer classification using high-dimensional omics data☆18Jan 24, 2022Updated 4 years ago