Danko-Lab / TEDLinks
a fully Bayesian approach to deconvolve tumor microenvironment
☆60Updated 3 years ago
Alternatives and similar repositories for TED
Users that are interested in TED are comparing it to the libraries listed below
Sorting:
- scWGCNA☆61Updated 2 years ago
- Normalize CITEseq Data☆66Updated 3 months ago
- ☆41Updated 4 years ago
- ☆41Updated last month
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆59Updated 5 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆84Updated last month
- Collection of cell type reference datasets.☆58Updated last year
- ☆47Updated last year
- R package for single cell and other data analysis using diffusion maps☆88Updated 8 months ago
- ☆47Updated 6 months ago
- identifying disease critical cell types and programs from single cell RNAseq☆57Updated 3 years ago
- ☆47Updated 3 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- R/Bioconductor package for working with 10x scATACseq data☆40Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆85Updated last week
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- Imputation method for scRNA-seq based on low-rank approximation☆78Updated last year
- Bostongene cell deconvolution algorithm from RNAseq☆55Updated last year
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated 2 years ago
- Unified access to several second-generation deconvolution methods☆73Updated last week
- A unified interface to spatial transcriptomics deconvolution tools☆42Updated last week
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆41Updated 3 years ago
- ☆60Updated 4 years ago
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- ☆59Updated 10 months ago
- ☆49Updated last month
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆92Updated 7 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- Pan-Cancer Single Cell Classifier☆73Updated last year