poseidonchan / TAPELinks
Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)
☆54Updated last year
Alternatives and similar repositories for TAPE
Users that are interested in TAPE are comparing it to the libraries listed below
Sorting:
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆73Updated last year
- ☆33Updated 5 months ago
- ☆123Updated 3 years ago
- A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.☆61Updated 2 weeks ago
- Iterative transfer learning with neural network improves clustering and cell type classification in single-cell RNA-seq analysis☆55Updated 4 months ago
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆69Updated last year
- ☆84Updated last year
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆39Updated 3 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆94Updated 7 months ago
- Code for evaluating single cell foundation models scBERT and scGPT☆46Updated last year
- domain adaptation of spatial and single-cell transcriptome☆27Updated last year
- PyTorch implementation of the MIDAS algorithm for single-cell multimodal data integration (Nature Biotechnology 2024).☆59Updated last month
- Dependency-aware deep generative models for multitasking analysis of spatial genomics data☆36Updated last year
- ☆56Updated last year
- ☆114Updated 4 months ago
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆60Updated last year
- Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space☆79Updated last month
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- Reproducing the experiments of the DestVI paper☆19Updated 3 years ago
- ☆54Updated 2 months ago
- ☆37Updated 3 months ago
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆56Updated last year
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆43Updated 2 years ago
- ☆60Updated 2 years ago
- ☆21Updated last year
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆37Updated last year
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆46Updated 4 years ago
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆120Updated 4 months ago
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.☆98Updated last month
- Single-cell biological network inference using a heterogeneous graph transformer☆76Updated 7 months ago