poseidonchan / TAPELinks
Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)
☆56Updated last year
Alternatives and similar repositories for TAPE
Users that are interested in TAPE are comparing it to the libraries listed below
Sorting:
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆66Updated last year
- ☆57Updated 10 months ago
- ☆55Updated 2 years ago
- domain adaptation of spatial and single-cell transcriptome☆27Updated 8 months ago
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆58Updated last year
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆54Updated 10 months ago
- Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space☆77Updated last week
- ☆44Updated 3 months ago
- Dependency-aware deep generative models for multitasking analysis of spatial genomics data☆35Updated 10 months ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆93Updated 2 months ago
- ☆58Updated 8 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆87Updated 3 months ago
- Reproducing the experiments of the DestVI paper☆18Updated 3 years ago
- scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics☆40Updated 2 years ago
- Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices☆65Updated last year
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆118Updated last week
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆62Updated 11 months ago
- A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.☆48Updated 4 months ago
- ☆30Updated last month
- ☆54Updated last month
- ☆59Updated last year
- ☆35Updated 2 weeks ago
- ☆47Updated last year
- ☆119Updated 2 years ago
- Additional code and analysis from the single-cell integration benchmarking project☆65Updated 2 years ago
- ☆55Updated last year
- PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.☆28Updated last year
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆35Updated 11 months ago
- Code for evaluating single cell foundation models scBERT and scGPT☆43Updated 9 months ago
- Super-resolved spatial transcriptomics by deep data fusion☆73Updated 2 years ago