Alternatives and similar repositories for sc-pert:

Users that are interested in sc-pert are comparing it to the libraries listed below

• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆110Updated 5 months ago
• Genentech / scimilarity
  A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…
  ☆162Updated last month
• YosefLab / scib-metrics
  Accelerated, Python-only, single-cell integration benchmarking metrics
  ☆53Updated this week
• scverse / pertpy
  Perturbation Analysis in the scverse ecosystem.
  ☆148Updated 2 weeks ago
• nitzanlab / biolord
  ☆71Updated 5 months ago
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆56Updated 2 years ago
• theislab / cpa
  The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…
  ☆93Updated 5 months ago
• openproblems-bio / openproblems-v2
  Formalizing and benchmarking open problems in single-cell genomics
  ☆56Updated last month
• xianglin226 / Benchmarking-Single-Cell-Perturbation
  Single-Cell (Perturbation) Model Library
  ☆35Updated last week
• HelloWorldLTY / scEval
  Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.
  ☆62Updated 2 weeks ago
• LewisLabUCSD / Ligand-Receptor-Pairs
  Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.
  ☆125Updated 2 years ago
• SONGDONGYUAN1994 / scDesign3
  scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
  ☆88Updated 2 months ago
• theislab / chemCPA
  Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
  ☆105Updated this week
• saezlab / decoupler-py
  Python package to perform enrichment analysis from omics data.
  ☆176Updated last week
• jkobject / scPRINT
  single cell foundation model for Gene network inference and more
  ☆15Updated 4 months ago
• welch-lab / MultiVelo
  Multi-omic velocity inference
  ☆108Updated 3 months ago
• klarman-cell-observatory / scPhere
  ☆99Updated last year
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆134Updated 10 months ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆49Updated 3 years ago
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆78Updated 3 weeks ago
• Genentech / sVAE
  ☆58Updated last year
• theislab / prophet
  ☆27Updated last month
• changwn / scFEA
  single cell Flux Estimation Analysis (scFEA) Try the below web server!
  ☆111Updated last year
• cantinilab / scPRINT
  single cell foundation model for Gene network inference and more
  ☆42Updated this week
• PayamDiba / SERGIO
  A simulator for single-cell expression data guided by gene regulatory networks
  ☆57Updated 8 months ago
• colomemaria / epiScanpy
  Episcanpy: Epigenomics Single Cell Analysis in Python
  ☆141Updated last month
• Durenlab / LINGER
  ☆84Updated 3 weeks ago
• HantaoShu / DeepSEM
  ☆73Updated last year
• dpeerlab / spectra
  Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms
  ☆162Updated 6 months ago
• pinellolab / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆57Updated 3 months ago