theislab / sc-pertLinks
Models and datasets for perturbational single-cell omics
☆168Updated 3 years ago
Alternatives and similar repositories for sc-pert
Users that are interested in sc-pert are comparing it to the libraries listed below
Sorting:
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆156Updated 9 months ago
- ☆88Updated last year
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆120Updated last year
- Accelerated, Python-only, single-cell integration benchmarking metrics☆79Updated this week
- ☆64Updated 4 months ago
- Single-cell perturbation analysis☆218Updated last week
- Additional code and analysis from the single-cell integration benchmarking project☆69Updated 2 years ago
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆227Updated 5 months ago
- 🏃 The go-to single-cell Foundation Model☆123Updated last week
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.☆99Updated 3 months ago
- Comprehensive suite for evaluating perturbation prediction models☆112Updated last month
- ☆86Updated 2 years ago
- Transformer for One-Stop Interpretable Cell-type Annotation☆146Updated last year
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆46Updated 2 years ago
- Single-Cell (Perturbation) Model Library☆85Updated this week
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆111Updated 2 months ago
- BEELINE: evaluation of algorithms for gene regulatory network inference☆198Updated last week
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆58Updated 5 months ago
- SIMBA: SIngle-cell eMBedding Along with features☆64Updated last year
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆146Updated 2 years ago
- ☆147Updated last year
- Formalizing and benchmarking open problems in single-cell genomics☆57Updated 6 months ago
- ☆44Updated 5 months ago
- A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.☆65Updated last month
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆56Updated last week
- Single-cell ATAC-seq analysis via Latent feature Extraction☆103Updated 2 years ago
- ☆38Updated last month
- Code for evaluating single cell foundation models scBERT and scGPT☆46Updated last year
- ☆101Updated 2 years ago
- ☆32Updated 5 years ago