theislab / sc-pertLinks
Models and datasets for perturbational single-cell omics
☆171Updated 3 years ago
Alternatives and similar repositories for sc-pert
Users that are interested in sc-pert are comparing it to the libraries listed below
Sorting:
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆158Updated 10 months ago
- ☆89Updated last year
- Single-cell perturbation analysis☆237Updated last week
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆124Updated last year
- Comprehensive suite for evaluating perturbation prediction models☆113Updated 2 weeks ago
- Accelerated, Python-only, single-cell integration benchmarking metrics☆79Updated last week
- Additional code and analysis from the single-cell integration benchmarking project☆71Updated 3 years ago
- Single-Cell (Perturbation) Model Library☆87Updated 3 weeks ago
- ☆67Updated 5 months ago
- ☆48Updated 5 months ago
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆230Updated 6 months ago
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆46Updated 2 years ago
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆59Updated 5 months ago
- BEELINE: evaluation of algorithms for gene regulatory network inference☆200Updated last month
- ☆149Updated last year
- Formalizing and benchmarking open problems in single-cell genomics☆57Updated 6 months ago
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.☆100Updated 3 months ago
- Single-cell perturbation effects prediction benchmark☆44Updated 5 months ago
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆112Updated 3 months ago
- 🏃 The go-to single-cell Foundation Model☆126Updated 2 weeks ago
- Transformer for One-Stop Interpretable Cell-type Annotation☆146Updated last year
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆57Updated this week
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆89Updated last month
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆146Updated 2 years ago
- Code for evaluating single cell foundation models scBERT and scGPT☆46Updated last year
- ☆38Updated 2 weeks ago
- ☆87Updated 2 years ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆53Updated 3 years ago
- A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.☆67Updated 2 months ago
- A modular framework for multimodal cross-cell-type transcriptional regulation models☆98Updated 4 months ago