ebecht / MCPcounterLinks
☆59Updated 3 years ago
Alternatives and similar repositories for MCPcounter
Users that are interested in MCPcounter are comparing it to the libraries listed below
Sorting:
- ☆41Updated 7 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- Transcriptomic tools to classify bladder tumours according to six published molecular classifications : Baylor, UNC, MDA, Lund, CIT-Curie…☆27Updated 2 years ago
- ☆47Updated 7 months ago
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆53Updated 3 weeks ago
- GLASS consortium☆41Updated 5 years ago
- ☆30Updated 7 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆79Updated 3 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- ☆59Updated 5 years ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆83Updated 2 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters an…☆43Updated 3 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆77Updated 2 months ago
- Homologous recombination deficiency in TCGA PanCancer Atlas☆28Updated 4 years ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆35Updated 3 years ago
- Scripts for processing single liver cells RNA-Seq 10X Genomics Data☆25Updated 6 years ago
- Mouse cell atlas☆61Updated 5 years ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated 2 years ago
- R package for robust clustering of single cell RNA sequencing data☆40Updated 2 years ago
- Bostongene cell deconvolution algorithm from RNAseq☆56Updated last year
- ☆32Updated 3 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- An R package to time somatic mutations☆62Updated 4 years ago
- ☆59Updated 11 months ago
- ☆48Updated 5 years ago
- The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…☆40Updated 3 months ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆31Updated 5 years ago