☆62Jun 21, 2022Updated 4 years ago
Alternatives and similar repositories for MCPcounter
Users that are interested in MCPcounter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Murine version of MCP-counter, a tool to estimate the immune and stromal composition of heterogeneous tissue, from transcriptomic data☆12Jun 30, 2022Updated 4 years ago
- Single Cell Genomics for Enhancing Cell Composition Inference from Bulk Genomics Data☆21Jul 13, 2021Updated 5 years ago
- Cell types enrichment analysis☆213May 27, 2024Updated 2 years ago
- Tumor-Infiltrating CD8 Lymphocytes states prediction☆14Feb 7, 2024Updated 2 years ago
- Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.☆28Nov 2, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆33Dec 2, 2021Updated 4 years ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆547Jul 6, 2026Updated 2 weeks ago
- ☆59Apr 28, 2020Updated 6 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆124Apr 26, 2025Updated last year
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆87Jul 12, 2023Updated 3 years ago
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆18Sep 10, 2024Updated last year
- ☆40Apr 16, 2018Updated 8 years ago
- Mutation Spectra Analysis☆10Mar 15, 2018Updated 8 years ago
- ☆19May 31, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆50Nov 29, 2025Updated 7 months ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆23Jun 10, 2025Updated last year
- Contains tools used by cBioPortal data curators when preparing data for upload into the datahub repos.☆22Jun 1, 2026Updated last month
- BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data☆29Apr 3, 2024Updated 2 years ago
- ☆29Sep 25, 2015Updated 10 years ago
- A browser extension and web application for extracting gene sets from GEO and piping them to Enrichr.☆15May 1, 2023Updated 3 years ago
- ☆11Dec 20, 2024Updated last year
- A tool for large scale omics datasets evaluation☆24Jun 14, 2023Updated 3 years ago
- a toolbox for metabolomic data analysis, visualization and ‘omic’ integration☆13Jun 21, 2018Updated 8 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A flexible framework for nucleosome profiling of cell-free DNA☆31Jul 27, 2023Updated 2 years ago
- APAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approach…☆13Apr 5, 2026Updated 3 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆48Jun 12, 2023Updated 3 years ago
- An R-based interface for loom files☆68Jul 9, 2020Updated 6 years ago
- ☆48Apr 18, 2020Updated 6 years ago
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Sep 20, 2022Updated 3 years ago
- SCDC☆48Jun 20, 2025Updated last year
- A package to help convert different single-cell data formats to each other☆473Feb 20, 2026Updated 5 months ago
- Codes used in pan-T cell analysis☆67Mar 13, 2023Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Collection of fragmentomic analysis scripts☆14Jul 3, 2024Updated 2 years ago
- 📺 Discover the latest machine learning / AI courses on YouTube.☆25Nov 26, 2023Updated 2 years ago
- IKAP - Identifying K mAjor cell Population groups in single-cell RNA-seq analysis☆19Mar 16, 2020Updated 6 years ago
- ☆24Jul 9, 2025Updated last year
- scRNA-seq cell type identification☆44Oct 3, 2019Updated 6 years ago
- Unified access to several second-generation deconvolution methods☆105Jul 6, 2026Updated 2 weeks ago
- countsimQC - Compare characteristic features of count data sets☆30Apr 28, 2026Updated 2 months ago