ebecht / MCPcounterLinks
☆59Updated 3 years ago
Alternatives and similar repositories for MCPcounter
Users that are interested in MCPcounter are comparing it to the libraries listed below
Sorting:
- ☆40Updated 7 years ago
- ☆29Updated 7 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Bostongene cell deconvolution algorithm from RNAseq☆55Updated last year
- R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters an…☆42Updated 3 years ago
- ☆59Updated 5 years ago
- An R package for classification of immune subtypes, in cancer, using gene expression data.☆46Updated 6 months ago
- identifying disease critical cell types and programs from single cell RNAseq☆57Updated 3 years ago
- ☆47Updated 6 months ago
- An R toolkit for estimation of cell composition from bulk expression data☆74Updated last month
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆72Updated 6 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated 2 years ago
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆53Updated 8 months ago
- Mouse cell atlas☆60Updated 5 years ago
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆59Updated 5 months ago
- Clone of the Bioconductor repository for the DropletUtils package.☆60Updated 2 weeks ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- scWGCNA☆61Updated 2 years ago
- a fully Bayesian approach to deconvolve tumor microenvironment☆60Updated 3 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated 2 years ago
- Transcriptomic tools to classify bladder tumours according to six published molecular classifications : Baylor, UNC, MDA, Lund, CIT-Curie…☆27Updated 2 years ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Updated 2 years ago
- Collection of cell type reference datasets.☆58Updated last year
- ☆82Updated last year
- HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data☆97Updated 3 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…☆39Updated last month
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- R package for Pathway RespOnsive GENe activity inference☆107Updated 2 years ago